Mercurial > repos > bgruening > hicexplorer_hicinfo
diff hicInfo.xml @ 6:3a74a441b11f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
| author | iuc |
|---|---|
| date | Tue, 16 Mar 2021 15:00:47 +0000 |
| parents | de14870013da |
| children |
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--- a/hicInfo.xml Fri Dec 11 21:22:05 2020 +0000 +++ b/hicInfo.xml Tue Mar 16 15:00:47 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="hicexplorer_hicinfo" name="@BINARY@" version="@WRAPPER_VERSION@.0"> +<tool id="hicexplorer_hicinfo" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> <description>get information about the content of a Hi-C matrix</description> <macros> <token name="@BINARY@">hicInfo</token> @@ -8,7 +8,8 @@ <command detect_errors="exit_code"><![CDATA[ ln -s '$matrix_h5_cooler' 'matrix_name.$matrix_h5_cooler.ext' && - @BINARY@ --matrices 'matrix_name.$matrix_h5_cooler.ext' + @BINARY@ + --matrices 'matrix_name.$matrix_h5_cooler.ext' -o hicInfo.txt ]]> </command> @@ -16,12 +17,12 @@ <expand macro='matrix_h5_cooler_macro' /> </inputs> <outputs> - <data name="info" from_work_dir="hicInfo.txt" format="txt" label="${tool.name} on ${matrix_h5_cooler.name} [${on_string}]: matrix info"/> + <data name="info" from_work_dir="hicInfo.txt" format="txt" label="${tool.name} on ${matrix_h5_cooler.name} [${on_string}]: matrix info" /> </outputs> <tests> <test> - <param name="matrix_h5_cooler" value="small_test_matrix.h5"/> - <output name="info" file="hicInfo/hicInfo_output.txt" ftype="txt" lines_diff="3"/> + <param name="matrix_h5_cooler" value="small_test_matrix.h5" /> + <output name="info" file="hicInfo/hicInfo_output.txt" ftype="txt" lines_diff="3" /> </test> </tests> <help><![CDATA[ @@ -88,6 +89,6 @@ | For more information about HiCExplorer please consider our documentation on readthedocs.io_ .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html -]]></help> +]]> </help> <expand macro="citations" /> </tool>