diff hicInfo.xml @ 6:3a74a441b11f draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"

--- a/hicInfo.xml	Fri Dec 11 21:22:05 2020 +0000
+++ b/hicInfo.xml	Tue Mar 16 15:00:47 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hicinfo" name="@BINARY@" version="@WRAPPER_VERSION@.0">
+<tool id="hicexplorer_hicinfo" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>get information about the content of a Hi-C matrix</description>
     <macros>
         <token name="@BINARY@">hicInfo</token>
@@ -8,7 +8,8 @@
     <command detect_errors="exit_code"><![CDATA[
 
         ln -s '$matrix_h5_cooler' 'matrix_name.$matrix_h5_cooler.ext' &&
-        @BINARY@ --matrices 'matrix_name.$matrix_h5_cooler.ext'
+        @BINARY@
+        --matrices 'matrix_name.$matrix_h5_cooler.ext'
         -o hicInfo.txt
 ]]>
     </command>
@@ -16,12 +17,12 @@
         <expand macro='matrix_h5_cooler_macro' />
     </inputs>
     <outputs>
-        <data name="info" from_work_dir="hicInfo.txt" format="txt" label="${tool.name} on ${matrix_h5_cooler.name} [${on_string}]: matrix info"/>
+        <data name="info" from_work_dir="hicInfo.txt" format="txt" label="${tool.name} on ${matrix_h5_cooler.name} [${on_string}]: matrix info" />
     </outputs>
     <tests>
         <test>
-            <param name="matrix_h5_cooler" value="small_test_matrix.h5"/>
-            <output name="info" file="hicInfo/hicInfo_output.txt" ftype="txt" lines_diff="3"/>
+            <param name="matrix_h5_cooler" value="small_test_matrix.h5" />
+            <output name="info" file="hicInfo/hicInfo_output.txt" ftype="txt" lines_diff="3" />
         </test>
     </tests>
     <help><![CDATA[
@@ -88,6 +89,6 @@
 | For more information about HiCExplorer please consider our documentation on readthedocs.io_
 
 .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html
-]]></help>
+]]>    </help>
     <expand macro="citations" />
 </tool>