Mercurial > repos > bgruening > hicexplorer_hicinfo
view test-data/hicQuickQC/QC.log @ 2:de14870013da draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"
| author | iuc |
|---|---|
| date | Wed, 11 Mar 2020 16:49:58 -0400 |
| parents | 708e1b8eff5c |
| children | 3a74a441b11f |
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File /tmp/tmpp4d6khlj.h5 Sequenced reads 983 Min rest. site distance 300 Max library insert size 1000 # count (percentage w.r.t. total sequenced reads) Pairs mappable, unique and high quality 300 (30.52) Hi-C contacts 215 (21.87) One mate unmapped 506 (51.48) One mate not unique 13 (1.32) Low mapping quality 164 (16.68) # count (percentage w.r.t. mappable, unique and high quality pairs) dangling end 0 (0.00) self ligation (removed) 0 (0.00) One mate not close to rest site 0 (0.00) same fragment 85 (28.33) self circle 0 (0.00) duplicated pairs 0 (0.00) # count (percentage w.r.t. total valid pairs used) inter chromosomal 24 (11.16) Intra short range (< 20kb) 61 (28.37) Intra long range (>= 20kb) 130 (60.47) Read pair type: inward pairs 42 (19.53) Read pair type: outward pairs 66 (30.70) Read pair type: left pairs 48 (22.33) Read pair type: right pairs 35 (16.28)