comparison test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 0:55b013e59018 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author bgruening
date Wed, 18 Oct 2023 17:02:07 +0000
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children c261b6b05ee3
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-1:000000000000 0:55b013e59018
1 # Created with chicQualityControl version 3.7.2
2 # QC report for matrices: 0_matrix.cool 1_matrix.cool
3 #Sparsity threshold for rejection: sparsity <= 0.05 are rejected.
4
5 Number of reference points: 43
6 Number of accepted reference points: 35
7 Number of rejected reference points: 8
8 Number of faulty reference points: 0
9
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11 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
12 It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
13 Please check the results of hicInfo to validate this for your data.