diff hicMergeLoops.xml @ 8:1511a8ebe906 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 11:01:55 +0000
parents 94b552c6830a
children ed900cd4a0a9
line wrap: on
line diff
--- a/hicMergeLoops.xml	Tue Jan 10 18:52:50 2023 +0000
+++ b/hicMergeLoops.xml	Wed Oct 18 11:01:55 2023 +0000
@@ -17,16 +17,16 @@
             --outFileName merged_loops.bedgraph
     ]]>    </command>
     <inputs>
-        <param argument="--inputFiles" type="data" format='bed' multiple="true" label="Loop files to merge" help="The loop files from hicDetectLoops. To use files from other sources,
+        <param argument="--inputFiles" type="data" format="bed" multiple="true" label="Loop files to merge" help="The loop files from hicDetectLoops. To use files from other sources,
             please follow \'chr start end chr start end\' format and remove any header." />
-        <param argument="--lowestResolution" type="integer" value="" label="Lowest used resolution" help='The lowest resolution of all loop files, i.e. 5kb, 10kb and 25kb, please use 25000.' />
+        <param argument="--lowestResolution" type="integer" value="" label="Lowest used resolution" help="The lowest resolution of all loop files, i.e. 5kb, 10kb and 25kb, please use 25000." />
     </inputs>
     <outputs>
         <data name="mergedLoops" from_work_dir="merged_loops.bedgraph" format="bed" label="${tool.name} on  [${on_string}]: Merged loops" />
     </outputs>
     <tests>
         <test>
-            <param name="inputFiles" ftype='bed' value="hicMergeLoops/gm12878_10kb.bedgraph,hicMergeLoops/gm12878_5kb.bedgraph,hicMergeLoops/gm12878_25kb.bedgraph" />
+            <param name="inputFiles" ftype="bed" value="hicMergeLoops/gm12878_10kb.bedgraph,hicMergeLoops/gm12878_5kb.bedgraph,hicMergeLoops/gm12878_25kb.bedgraph" />
             <param name="lowestResolution" value="25000" />
             <output name="mergedLoops" file="hicMergeLoops/gm12878_all.bedgraph" ftype="bed" />
         </test>