comparison test-data/raw_qc_report @ 4:8cad169bde4c draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
author iuc
date Tue, 02 Jan 2018 10:15:37 -0500
parents
children 8926550196ce
comparison
equal deleted inserted replaced
3:5186eda61ca4 4:8cad169bde4c
1
2 File text_matrix.h5
3 Pairs considered 983
4 Min rest. site distance 300
5 Max library insert size 1000
6
7 # count (percentage w.r.t. total sequenced reads)
8 Pairs mappable, unique and high quality 300 (30.52)
9 Pairs used 215 (21.87)
10 One mate unmapped 506 (51.48)
11 One mate not unique 13 (1.32)
12 One mate low quality 164 (16.68)
13
14 # count (percentage w.r.t. mappable, unique and high quality pairs)
15 dangling end 0 (0.00)
16 self ligation (removed) 0 (0.00)
17 One mate not close to rest site 0 (0.00)
18 same fragment 85 (28.33)
19 self circle 0 (0.00)
20 duplicated pairs 0 (0.00)
21
22 # count (percentage w.r.t. total valid pairs used)
23 inter chromosomal 24 (11.16)
24 short range < 20kb 61 (28.37)
25 long range 130 (60.47)
26 inward pairs 42 (19.53)
27 outward pairs 66 (30.70)
28 left pairs 48 (22.33)
29 right pairs 35 (16.28)