Mercurial > repos > bgruening > hicexplorer_hicmergematrixbins

comparison hicMergeMatrixBins.xml @ 19:977dc15add20 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:38:18 +0000
parents 03dd3c16ae4e
children
comparison
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18:4d511437b1e5 19:977dc15add20
14 --outFileName 'matrix.$matrix_h5_cooler.ext' 14 --outFileName 'matrix.$matrix_h5_cooler.ext'
15 && mv 'matrix.$matrix_h5_cooler.ext' matrix 15 && mv 'matrix.$matrix_h5_cooler.ext' matrix
16 ]]> 16 ]]>
17 </command> 17 </command>
18 <inputs> 18 <inputs>
19 <expand macro='matrix_h5_cooler_macro' /> 19 <expand macro="matrix_h5_cooler_macro" />
20 <param argument="--numBins" type="integer" min="1" value="3" label="Number of bins to merge" /> 20 <param argument="--numBins" type="integer" min="1" value="3" label="Number of bins to merge" />
21 <param argument="--runningWindow" type="boolean" falsevalue="" truevalue="--runningWindow" label="Set to merge for using a running window of length --numBins. Usually not set." /> 21 <param argument="--runningWindow" type="boolean" falsevalue="" truevalue="--runningWindow" label="Set to merge for using a running window of length --numBins. Usually not set." />
22 </inputs> 22 </inputs>
23 <outputs> 23 <outputs>
24 <data name="outFileName" from_work_dir="matrix" format="cool"> 24 <data name="outFileName" from_work_dir="matrix" format="cool">
31 <test> 31 <test>
32 <param name="matrix_h5_cooler" value="small_test_matrix.h5" /> 32 <param name="matrix_h5_cooler" value="small_test_matrix.h5" />
33 <param name="numBins" value="5" /> 33 <param name="numBins" value="5" />
34 <output name="outFileName" ftype="h5"> 34 <output name="outFileName" ftype="h5">
35 <assert_contents> 35 <assert_contents>
36 <has_h5_keys keys='intervals,matrix,nan_bins' /> 36 <has_h5_keys keys="intervals,matrix,nan_bins" />
37 </assert_contents> 37 </assert_contents>
38 </output> 38 </output>
39 </test> 39 </test>
40 </tests> 40 </tests>
41 <help><![CDATA[ 41 <help><![CDATA[