Mercurial > repos > bgruening > hicexplorer_hicmergematrixbins
comparison hicMergeMatrixBins.xml @ 20:11fa44ee0603 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2024 20:13:46 +0000 |
| parents | 977dc15add20 |
| children |
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| 19:977dc15add20 | 20:11fa44ee0603 |
|---|---|
| 1 <tool id="hicexplorer_hicmergematrixbins" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> | 1 <tool id="hicexplorer_hicmergematrixbins" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 2 <description>merge adjacent bins from a Hi-C contact matrix to reduce its resolution</description> | 2 <description>merge adjacent bins from a Hi-C contact matrix to reduce its resolution</description> |
| 3 <macros> | 3 <macros> |
| 4 <token name="@BINARY@">hicMergeMatrixBins</token> | 4 <token name="@BINARY@">hicMergeMatrixBins</token> |
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 9 ln -s '$matrix_h5_cooler' 'matrix.$matrix_h5_cooler.ext' && | 9 ln -s '$matrix_h5_cooler' 'matrix.$matrix_h5_cooler.ext' && |
| 10 @BINARY@ | 10 @BINARY@ |
| 11 --matrix 'matrix.$matrix_h5_cooler.ext' | 11 --matrix 'matrix.$matrix_h5_cooler.ext' |
| 12 --numBins $numBins | 12 --numBins $numBins |
| 13 $runningWindow | 13 $runningWindow |
| 14 --outFileName 'matrix.$matrix_h5_cooler.ext' | 14 --outFileName 'out_matrix.$matrix_h5_cooler.ext' |
| 15 && mv 'matrix.$matrix_h5_cooler.ext' matrix | 15 && mv 'out_matrix.$matrix_h5_cooler.ext' matrix |
| 16 ]]> | 16 ]]> |
| 17 </command> | 17 </command> |
| 18 <inputs> | 18 <inputs> |
| 19 <expand macro="matrix_h5_cooler_macro" /> | 19 <expand macro="matrix_h5_cooler_macro" /> |
| 20 <param argument="--numBins" type="integer" min="1" value="3" label="Number of bins to merge" /> | 20 <param argument="--numBins" type="integer" min="1" value="3" label="Number of bins to merge" /> |