diff macros.xml @ 7:c14ba4629233 draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit eec0a4d5a7c5ba4ec0fbd2ead8280c3d143bb9d8

--- a/macros.xml	Wed Mar 07 03:45:11 2018 -0500
+++ b/macros.xml	Fri Apr 27 03:38:09 2018 -0400
@@ -1,7 +1,6 @@
 <macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
-    <token name="@WRAPPER_VERSION@">2.1</token>
-
+    <token name="@WRAPPER_VERSION@">2.1.2</token>
     <token name="@USE_RANGE@">
         #if $use_range.select_use_range == "yes_use_range":
             --range $range_min:$range_max
@@ -28,7 +27,7 @@
     </xml>
     <xml name="use_range">
         <conditional name="use_range"> <!-- argparse specifies one argument of type min_range:max_range -->
-            <param name="select_use_range" type="select" label="Range restriction (in bp)" argument="--range">
+            <param name="select_use_range" type="select" label="Range restriction (in bp)" argument="--range" help="If given, only counts within the specified range are considered.">
                 <option value="no_use_range">No restriction</option>
                 <option value="yes_use_range">Only consider counts within a range</option>
             </param>
@@ -40,8 +39,8 @@
     </xml>
 
     <xml name="range">
-        <param name="range_min" type="integer" value="" min="0"/>
-        <param name="range_max" type="integer" value="" min="0"/>
+        <param name='range_min' label="Minimum range to consider interactions" type="integer" value="" min="0" help="The minimum range should be farer from the diagonal than median TAD size in order to reduce background interactions."/>
+        <param name='range_max' label="Maximum range to consider interactions" type="integer" value="" min="0"/>
     </xml>
 
     <xml name="colormap">
@@ -189,9 +188,9 @@
 
 
     <xml name="multiple_input_matrices">
-        <repeat name="input_files" title="HiC Matrix files" min="2">
+        <repeat name="input_files" title="Hi-C Matrix files" min="2">
             <param name="matrix" type="data" format="h5,cool"
-                label="HiC Matrix file"
+                label="Hi-C Matrix file"
                 help=""/>
             <param name="mlabel" type="text" size="30" optional="true" value=""
                 label="Label"