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view test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed @ 11:49c8055f6830 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"
author bgruening
date Mon, 16 Dec 2019 15:46:21 -0500
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# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev
# This file contains the p-values computed by fisher test
# To test the smoothed (float) values they were rounded up to the next integer
#
# Alpha level 0.5
# Degrees of freedom 1
#
# FL-E13-5_chr1.cool	chr1_4487435_4487435	4.29  Mbp	4.69  Mbp	Sox17	Sum of interactions in fixate range: 810.0
# MB-E10-5_chr1.cool	chr1_4487435_4487435	4.29  Mbp	4.69  Mbp	Sox17	Sum of interactions in fixate range: 978.0
#Chromosome	Start	End	Gene	Relative distance	sum of interactions 1	target_1 raw	sum of interactions 2	target_2 raw	p-value
chr1	4472000	4503000	Sox17	15000	810.00000	566.20000	978.00000	724.40000		0.44082
chr1	4507000	4516000	Sox17	28000	810.00000	38.80000	978.00000	19.00000		0.00117
chr1	4520000	4531000	Sox17	43000	810.00000	10.40000	978.00000	22.20000		0.16402
chr1	4533000	4543000	Sox17	55000	810.00000	6.80000	978.00000	12.20000		0.37847
chr1	4562000	4593000	Sox17	105000	810.00000	25.00000	978.00000	23.20000		0.46860
chr1	4664000	4669000	Sox17	181000	810.00000	1.20000	978.00000	5.40000		0.30594