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view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 15:41dbf4d162a2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit fa140a9f660eab2459e21b0b637b129d7de24c02
author iuc
date Tue, 10 Jan 2023 18:56:55 +0000
parents 3b5b54ed6392
children 77919cc3618e
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# Created with chicQualityControl version 3.6
# QC report for matrices: 0_matrix.cool 1_matrix.cool 
#Sparsity threshold for rejection: sparsity <= 0.05 are rejected.

Number of reference points: 43
Number of accepted reference points: 35
Number of rejected reference points: 8
Number of faulty reference points: 0


A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices.
It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends.
Please check the results of hicInfo to validate this for your data.