Mercurial > repos > bgruening > hicexplorer_hicplotaverageregions

diff hicPlotAverageRegions.xml @ 8:ea5d67ec94ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:35:07 +0000
parents 5fb461d15c31
children dd9988943f53
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line diff
--- a/hicPlotAverageRegions.xml	Tue Jan 10 19:17:34 2023 +0000
+++ b/hicPlotAverageRegions.xml	Wed Oct 18 10:35:07 2023 +0000
@@ -32,7 +32,7 @@
 ]]>
     </command>
     <inputs>
-        <param argument="--matrix" type="data" format='zip' label="Average regions matrix computed by hicAverageRegions" />
+        <param argument="--matrix" type="data" format="zip" label="Average regions matrix computed by hicAverageRegions" />
         <param argument="--log1p" type="boolean" truevalue="--log1p" falsevalue="" checked="false" label="Plot the log1p of the matrix values (log(Hi-C contacts+1)). This option is recommended." />
         <param argument="--log" type="boolean" truevalue="--log" falsevalue="" checked="false" label="Plot the log of the matrix values. (log(Hi-C contacts))" />
 
@@ -60,21 +60,21 @@
         <test>
             <param name="matrix" value="hicAverageRegions/result_range_100000.npz" ftype="zip" />
             <param name="colormap" value="RdYlBu_r" />
-            <param name='dpi' value='10' />
+            <param name="dpi" value="10" />
             <output name="outFileName" file="hicPlotAverageRegions/defaults.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <param name="matrix" value="hicAverageRegions/result_range_100000.npz" ftype="zip" />
             <param name="colormap" value="RdYlBu_r" />
             <param name="log" value="True" />
-            <param name='dpi' value='10' />
+            <param name="dpi" value="10" />
             <output name="outFileName" file="hicPlotAverageRegions/defaults_log.png" ftype="png" compare="sim_size" />
         </test>
         <test>
             <param name="matrix" value="hicAverageRegions/result_range_100000.npz" ftype="zip" />
             <param name="colormap" value="RdYlBu_r" />
             <param name="log1p" value="True" />
-            <param name='dpi' value='10' />
+            <param name="dpi" value="10" />
             <output name="outFileName" file="hicPlotAverageRegions/defaults_log1p.png" ftype="png" compare="sim_size" />
         </test>
         <test>
@@ -82,7 +82,7 @@
             <param name="colormap" value="plasma" />
             <param name="vMax" value="20" />
             <param name="vMin" value="10" />
-            <param name='dpi' value='10' />
+            <param name="dpi" value="10" />
             <output name="outFileName" file="hicPlotAverageRegions/defaults_log_vmin_vmax.png" ftype="png" compare="sim_size" />
         </test>
     </tests>