diff test-data/raw_qc_report @ 12:34dc1acfcc62 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/raw_qc_report	Mon Dec 16 14:32:28 2019 -0500
@@ -0,0 +1,29 @@
+
+File	matrix.cool		
+Sequenced reads	983		
+Min rest. site distance	300		
+Max library insert size	1000		
+
+#	count	(percentage w.r.t. total sequenced reads)
+Pairs mappable, unique and high quality	300	(30.52)
+Hi-C contacts	215	(21.87)
+One mate unmapped	506	(51.48)
+One mate not unique	13	(1.32)
+Low mapping quality	164	(16.68)
+
+#	count	(percentage w.r.t. mappable, unique and high quality pairs)
+dangling end	0	(0.00)
+self ligation (removed)	0	(0.00)
+One mate not close to rest site	0	(0.00)
+same fragment	85	(28.33)
+self circle	0	(0.00)
+duplicated pairs	0	(0.00)
+
+#	count	(percentage w.r.t. total valid pairs used)
+inter chromosomal	24	(11.16)
+Intra short range (< 20kb)	61	(28.37)
+Intra long range (>= 20kb)	130	(60.47)
+Read pair type: inward pairs	42	(19.53)
+Read pair type: outward pairs	66	(30.70)
+Read pair type: left pairs	48	(22.33)
+Read pair type: right pairs	35	(16.28)