diff hicPlotDistVsCounts.xml @ 5:819bd2c44d4a draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 80462804e4fd7deafbcf8e8c5283cc7a98fa7dd5

--- a/hicPlotDistVsCounts.xml	Sat Dec 16 16:31:27 2017 -0500
+++ b/hicPlotDistVsCounts.xml	Sat Dec 30 09:29:00 2017 -0500
@@ -11,8 +11,8 @@
         #set matrices_labels=[]
         #for $counter, $m, in enumerate($matrices):
             #set identifier = re.sub('[^\s\w\-]', '_', str($m.element_identifier))
-            ln -f -s '${m}' '${identifier}_${counter}.npz.h5' &&
-            #silent $matrices_path.append("'%s_%s.npz.h5'" % ($identifier, $counter))
+            ln -f -s '${m}' '${identifier}_${counter}' &&
+            #silent $matrices_path.append("'%s_%s'" % ($identifier, $counter))
             #silent $matrices_labels.append("'%s'" % ($identifier))
         #end for
 
@@ -33,7 +33,7 @@
 ]]>
     </command>
     <inputs>
-        <param argument="--matrices" type="data" format="h5" multiple="True" label="HiC normalized (corrected) matrices"/>
+        <param argument="--matrices" type="data" format="h5,cool" multiple="True" label="HiC normalized (corrected) matrices"/>
 
         <param argument="--skipDiagonal" type="boolean" truevalue="--skipDiagonal" falsevalue="" label="Exclude diagonal counts" />
         <param argument="--perchr" type="boolean" truevalue="--perchr" falsevalue="" label="Generate plots per chromosome"