Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts
view test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 15:104bb2954821 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3d3fe0c7636592f01981d491dc8ff44bb55c1750"
author | iuc |
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date | Tue, 24 Mar 2020 13:34:14 -0400 |
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children | e2971589184b |
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# Created with chicQualityControl version 3.4.3 # QC report for matrices: 0_matrix.cool 1_matrix.cool #Sparsity threshold for rejection: sparsity <= 0.05 are rejected. Number of reference points: 43 Number of accepted reference points: 35 Number of rejected reference points: 8 Number of faulty reference points: 0 A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. Please check the results of hicInfo to validate this for your data.