Mercurial > repos > bgruening > hicexplorer_hicplotdistvscounts

view test-data/raw_qc_report @ 6:476afe8a72fc draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
author iuc
date Tue, 02 Jan 2018 10:13:34 -0500
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children ea39c587161f
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File	text_matrix.h5		
Pairs considered	983		
Min rest. site distance	300		
Max library insert size	1000		

#	count	(percentage w.r.t. total sequenced reads)
Pairs mappable, unique and high quality	300	(30.52)
Pairs used	215	(21.87)
One mate unmapped	506	(51.48)
One mate not unique	13	(1.32)
One mate low quality	164	(16.68)

#	count	(percentage w.r.t. mappable, unique and high quality pairs)
dangling end	0	(0.00)
self ligation (removed)	0	(0.00)
One mate not close to rest site	0	(0.00)
same fragment	85	(28.33)
self circle	0	(0.00)
duplicated pairs	0	(0.00)

#	count	(percentage w.r.t. total valid pairs used)
inter chromosomal	24	(11.16)
short range < 20kb	61	(28.37)
long range	130	(60.47)
inward pairs	42	(19.53)
outward pairs	66	(30.70)
left pairs	48	(22.33)
right pairs	35	(16.28)