comparison test-data/raw_qc_report @ 13:40b33e101621 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"
author bgruening
date Mon, 16 Dec 2019 15:45:27 -0500
parents
children 7babd8a46fe0
comparison
equal deleted inserted replaced
12:492c1c966a22 13:40b33e101621
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2 File matrix.cool
3 Sequenced reads 983
4 Min rest. site distance 300
5 Max library insert size 1000
6
7 # count (percentage w.r.t. total sequenced reads)
8 Pairs mappable, unique and high quality 300 (30.52)
9 Hi-C contacts 215 (21.87)
10 One mate unmapped 506 (51.48)
11 One mate not unique 13 (1.32)
12 Low mapping quality 164 (16.68)
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14 # count (percentage w.r.t. mappable, unique and high quality pairs)
15 dangling end 0 (0.00)
16 self ligation (removed) 0 (0.00)
17 One mate not close to rest site 0 (0.00)
18 same fragment 85 (28.33)
19 self circle 0 (0.00)
20 duplicated pairs 0 (0.00)
21
22 # count (percentage w.r.t. total valid pairs used)
23 inter chromosomal 24 (11.16)
24 Intra short range (< 20kb) 61 (28.37)
25 Intra long range (>= 20kb) 130 (60.47)
26 Read pair type: inward pairs 42 (19.53)
27 Read pair type: outward pairs 66 (30.70)
28 Read pair type: left pairs 48 (22.33)
29 Read pair type: right pairs 35 (16.28)