diff hicPlotTADs.xml @ 1:3615a7c5c119 draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 07491a9ed4870989c9a603b27a4b89173832700f

--- a/hicPlotTADs.xml	Thu Mar 30 02:59:24 2017 -0400
+++ b/hicPlotTADs.xml	Mon Apr 03 08:16:45 2017 -0400
@@ -31,8 +31,12 @@
 
 #if $x_axis.x_axis_select == "yes":
 [x-axis]
+#if $x_axis.fontsize:
 fontsize = $x_axis.fontsize
+#end if
+#if $x_axis.where:
 where = $x_axis.where
+#end if
 #else:
 [x-axis]
 #end if
@@ -54,6 +58,10 @@
 color = $track.color
 #end if
 
+#if $track.border_color:
+color = $track.border_color
+#end if
+
 #if $track.depth:
 depth = $track.depth
 #end if
@@ -62,8 +70,6 @@
 display = $track.display
 #end if
 
-##color = black
-
 #if $track.width
 width = $track.width
 #end if
@@ -166,6 +172,7 @@
             <param name="title" type="text" optional="true" label="Plot title"/>
             <expand macro="colormap" />
             <param name="color" type="color" value="#000000" label="Track color" optional="True" />
+            <param name="border_color" type="color" value="#000000" label="Border color" optional="True" />
             <param name="min_value" type="float" value="" optional="True" label="Minimum value"/>
             <param name="max_value" type="float" value="" optional="True" label="Maximum value"/>
 
@@ -205,6 +212,7 @@
 
             <param name="type" type="select" optional="True" label="Plotting type">
                 <option value="lines">Lines</option>
+                <option value="line">Line</option>
                 <option value="vlines">vertical dotted lines from the top to the bottom</option>
                 <option value="arcplot">arcplot</option>
                 <option value="interaction">interaction</option>