diff macros.xml @ 2:f23f7178fae6 draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 4d61b6bf2fed275ab38c226d0c4390b095a38251

--- a/macros.xml	Mon Apr 03 08:16:45 2017 -0400
+++ b/macros.xml	Thu Nov 02 11:12:48 2017 -0400
@@ -1,24 +1,11 @@
 <macros>
-    <xml name="stdio">
-        <stdio>
-            <exit_code range="1:" />
-            <exit_code range=":-1" />
-            <regex match="Error:" />
-            <regex match="Exception:" />
-            <regex match="EXception:" />
-            <regex match="Traceback" />
-        </stdio>
-    </xml>
-
-    <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
-    <token name="@WRAPPER_VERSION@">1.7.2</token>
+    <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
+    <token name="@WRAPPER_VERSION@">1.8</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.7.13">python</requirement>
             <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement>
             <yield />
         </requirements>
-        <expand macro="stdio" />
         <version_command>@BINARY@ --version</version_command>
     </xml>
 
@@ -325,7 +312,7 @@
 
 .. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
-.. _help site: https://github.com/fidelram/deepTools/wiki/
+.. _help site: https://hicexplorer.readthedocs.org
 
     </token>
 
@@ -537,6 +524,33 @@
         </data>
     </xml>
 
-
+    <xml name="track_input_h5_macro">
+        <param name="track_input_h5" type="data" format="h5" label="Track file h5 format"/>
+    </xml>
+    <xml name="track_input_bed_macro">
+        <param name="track_input_bed" type="data" format="bed" label="Track file bed format"/>
+    </xml>
+    <xml name="track_input_bedgraph_macro">
+        <param name="track_input_bedgraph" type="data" format="bedgraph" label="Track file bedgraph format"/>
+    </xml>
+    <xml name="track_input_bigwig_macro">
+        <param name="track_input_bigwig" type="data" format="bigwig" label="Track file bigwig format"/>
+    </xml>
+    <xml name="track_input_bedgraph_matrix_macro">
+        <param name="track_input_bedgraph_matrix" type="data" format="bedgraph" label="Track file bigwig format"/>
+    </xml>
+    <xml name="track_input_tabular_macro">
+        <param name="track_input_tabular" type="data" format="tabular" label="Track file tabular format"/>
+    </xml>
+    <xml name="plot_title">
+        <param name="title" type="text" optional="true" label="Plot title"/>
+    </xml>
 
+    <xml name="spacer_macro">
+        <param name="spacer_width" type="float" value="" optional="True"
+                label="Include spacer at the end of the track." help="Width of the spacer." />
+    </xml>
+    <xml name="fontsize_macro">
+                    <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" />
+    </xml>
 </macros>