Mercurial > repos > bgruening > hicexplorer_hicplotviewpoint

comparison hicPlotViewpoint.xml @ 9:84d4b83f092a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 4b602d427e0fc0da5353a4510798349de98e4ae4"
author iuc
date Wed, 11 Mar 2020 07:00:21 -0400
parents 5e9c304c424c
children b637a1e3cb14
comparison
equal deleted inserted replaced
8:d5c24ac2da6e 9:84d4b83f092a
9 9
10 #for $counter, $m in enumerate($matrix_h5_cooler_multiple): 10 #for $counter, $m in enumerate($matrix_h5_cooler_multiple):
11 ln -s '$m' ${counter}_matrix.$m.ext && 11 ln -s '$m' ${counter}_matrix.$m.ext &&
12 #end for 12 #end for
13 #set $m = ' '.join([ '\'%s_matrix.%s\'' % ($counter, $matrix.ext) for $counter, $matrix in enumerate($matrix_h5_cooler_multiple) ]) 13 #set $m = ' '.join([ '\'%s_matrix.%s\'' % ($counter, $matrix.ext) for $counter, $matrix in enumerate($matrix_h5_cooler_multiple) ])
14 14
15 @BINARY@ --matrix $m 15 @BINARY@ --matrix $m
16 #if $interactionOutFileName: 16 #if $interactionOutFileName:
17 $interactionOutFileName interactions 17 $interactionOutFileName interactions
18 #end if 18 #end if
19 --outFileName plot.$image_file_format 19 --outFileName plot.$image_file_format
20 --region $region 20 --region $region
21 --referencePoint $referencePoint 21 --referencePoint $referencePoint
22 && mv plot.$image_file_format plot 22 && mv plot.$image_file_format plot
23 23
24 #if $interactionOutFileName: 24 #if $interactionOutFileName:
25 && mkdir interaction 25 && mkdir interaction
26 #for $counter, $matrix in enumerate($m.split(' ')): 26 #for $counter, $matrix in enumerate($m.split(' ')):
27 && mv interactions_${matrix}.bedgraph interaction/${counter}_interactions.bedgraph 27 && mv interactions_${matrix}.bedgraph interaction/${counter}_interactions.bedgraph
28 #end for 28 #end for
29 #end if 29 #end if
30 ]]> 30 ]]>