diff hicQuickQC.xml @ 8:21d859ad4502 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author iuc
date Wed, 18 Oct 2023 10:11:51 +0000
parents 9c5078f3926b
children ea8fb5e899e8
line wrap: on
line diff
--- a/hicQuickQC.xml	Tue Jan 10 18:47:20 2023 +0000
+++ b/hicQuickQC.xml	Wed Oct 18 10:11:51 2023 +0000
@@ -41,13 +41,11 @@
         <expand macro="restrictionCutFile" />
         <expand macro="restrictionSequence" />
         <expand macro="danglingSequence" />
-
-        <param argument="--lines" optional='true' type="integer" label="Lines to analyze for the QC report" help= "Number of lines to consider for the qc test run." value='1000000' />
-
+        <param argument="--lines" optional="true" type="integer" label="Lines to analyze for the QC report" help= "Number of lines to consider for the qc test run." value="1000000" />
     </inputs>
     <outputs>
         <data name="qc" format="html" label="${tool.name} QC on ${on_string}" />
-        <data name="raw_qc" from_work_dir='raw_qc' format='txt' label="${tool.name} raw QC on ${on_string}" />
+        <data name="raw_qc" from_work_dir="raw_qc" format="txt" label="${tool.name} raw QC on ${on_string}" />
     </outputs>
     <tests>
         <test expect_num_outputs="2">
@@ -57,12 +55,11 @@
             <repeat name="samFiles">
                 <param name="samFile" value="small_test_R2_unsorted.sam" />
             </repeat>
-            <param name='restrictionCutFile' value='DpnII_10k.bed' />
-            <param name='restrictionSequence' value='GATC' />
-            <param name='danglingSequence' value='GATC' />
-
-            <param name="lines" value='1000' />
-            <output name="raw_qc" file='hicQuickQC/QC.log' compare='diff' lines_diff='2' />
+            <param name="restrictionCutFile" value="DpnII_10k.bed" />
+            <param name="restrictionSequence" value="GATC" />
+            <param name="danglingSequence" value="GATC" />
+            <param name="lines" value="1000" />
+            <output name="raw_qc" file="hicQuickQC/QC.log" compare="diff" lines_diff="2" />
         </test>
     </tests>
     <help><![CDATA[