comparison hicSumMatrices.xml @ 2:2bbe234ca6ce draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 4d61b6bf2fed275ab38c226d0c4390b095a38251

1:2fd2e6382d20

    <macros>
        <token name="@BINARY@">hicSumMatrices</token>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command>
<![CDATA[
        #for $counter, $m in enumerate($matrices):
            ln -s '$m' ${counter}.npz.h5 &&
        #end for

       #set $m = '" "'.join([ '%s.npz.h5' % $counter for $counter, $matrix in enumerate($matrices) ])
        hicSumMatrices
            --matrices "$m"
            --outFileName ./out.npz.h5

]]>
    </command>
    <inputs>

        <param argument="--matrices" type="data" format="h5" multiple="True"
            label="Matrices to combine" help="Needs to have the same shape"/>

    </inputs>
    <outputs>
        <data name="outFileName" from_work_dir="out.npz.h5" format="h5"/>
    </outputs>
    <tests>

2:2bbe234ca6ce

    <macros>
        <token name="@BINARY@">hicSumMatrices</token>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="exit_code"><![CDATA[

        #for $counter, $m in enumerate($matrices):
            ln -s '$m' ${counter}.npz.h5 &&
        #end for

        #set $m = '" "'.join([ '%s.npz.h5' % $counter for $counter, $matrix in enumerate($matrices) ])
        hicSumMatrices
            --matrices "$m"
            --outFileName ./out.npz.h5
]]>
    </command>
    <inputs>
        <param argument="--matrices" type="data" format="h5" multiple="True"
            label="Matrices to combine" help="Needs to have the same shape"/>
    </inputs>
    <outputs>
        <data name="outFileName" from_work_dir="out.npz.h5" format="h5"/>
    </outputs>
    <tests>