Mercurial > repos > bgruening > hicexplorer_hicsummatrices

comparison hicSumMatrices.xml @ 19:5aa5ef83f975 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 2a0943e78bdc8ebb13f181399206a9eea37ed78f"
author iuc
date Tue, 16 Mar 2021 15:39:40 +0000
parents e89bc5e38823
children 36dfa2825a59
comparison
equal deleted inserted replaced
18:d78ae621fc63 19:5aa5ef83f975
1 <tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@WRAPPER_VERSION@.0"> 1 <tool id="hicexplorer_hicsummatrices" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>combine Hi-C matrices of the same size</description> 2 <description>combine Hi-C matrices of the same size</description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">hicSumMatrices</token> 4 <token name="@BINARY@">hicSumMatrices</token>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
18 18
19 && mv 'matrix.$extension' matrix 19 && mv 'matrix.$extension' matrix
20 ]]> 20 ]]>
21 </command> 21 </command>
22 <inputs> 22 <inputs>
23 <expand macro='matrix_h5_cooler_multiple_macro'/> 23 <expand macro='matrix_h5_cooler_multiple_macro' />
24 </inputs> 24 </inputs>
25 <outputs> 25 <outputs>
26 <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple'/> 26 <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple' />
27 </outputs> 27 </outputs>
28 <tests> 28 <tests>
29 <test> 29 <test>
30 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5"/> 30 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" />
31
32 <output name="outFileName" ftype="h5"> 31 <output name="outFileName" ftype="h5">
33 <assert_contents> 32 <assert_contents>
34 <has_h5_keys keys='intervals,matrix'/> 33 <has_h5_keys keys='intervals,matrix' />
35 </assert_contents> 34 </assert_contents>
36 </output> 35 </output>
37 </test> 36 </test>
38 <test> 37 <test>
39 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool"/> 38 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" />
40
41 <output name="outFileName" ftype="cool"> 39 <output name="outFileName" ftype="cool">
42 <assert_contents> 40 <assert_contents>
43 <has_h5_keys keys='bins,chroms,indexes,pixels'/> 41 <has_h5_keys keys='bins,chroms,indexes,pixels' />
44 </assert_contents> 42 </assert_contents>
45 </output> 43 </output>
46 </test> 44 </test>
47 </tests> 45 </tests>
48 <help><![CDATA[ 46 <help><![CDATA[
47
49 Summation of matrices 48 Summation of matrices
50 ===================== 49 =====================
51 50
52 **hicSumMatrix** is combining two (or more) contact matrices of the same size to one. 51 **hicSumMatrix** is combining two (or more) contact matrices of the same size to one.
53 This is useful if replicates of an Hi-C experiment should be merged into one contact matrix to 52 This is useful if replicates of an Hi-C experiment should be merged into one contact matrix to
72 _________________ 71 _________________
73 72
74 | For more information about HiCExplorer please consider our documentation on readthedocs.io_ 73 | For more information about HiCExplorer please consider our documentation on readthedocs.io_
75 74
76 .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html 75 .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html
77 ]]></help> 76 ]]> </help>
78 <expand macro="citations" /> 77 <expand macro="citations" />
79 </tool> 78 </tool>