comparison hicSumMatrices.xml @ 4:d387dacb6867 draft

planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dfa5a68cb20842407941c7ffda9ef956a0e86a04

3:fd99ba440633

            <param name="matrices" value="hicCorrectMatrix_result1.npz.h5,hicCorrectMatrix_result1.npz.h5"/>
            <output name="outFileName" file="hicSumMatrices_result1.npz.h5" ftype="h5" compare="sim_size" delta="70000"/>
        </test>
    </tests>
    <help><![CDATA[

**What it does**

Combines Hi-C matrices of the same size.

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    <expand macro="citations" />
</tool>

4:d387dacb6867

            <param name="matrices" value="hicCorrectMatrix_result1.npz.h5,hicCorrectMatrix_result1.npz.h5"/>
            <output name="outFileName" file="hicSumMatrices_result1.npz.h5" ftype="h5" compare="sim_size" delta="70000"/>
        </test>
    </tests>
    <help><![CDATA[
Summation of matrices
=====================

``hicSumMatrix`` is combining two (or more) contact matrices of the same size to one. 
This is useful if replicates of an Hi-C experiment should be merged into one contact matrix to 
increase the power of the data. It is the nature of Hi-C that real contact cannot be distinguished
 from noise, especially with a low contact count. The more contacts are given, the more likely it is 
 that a high number of contacts are real contact or contain at least a high amount. Therefore it is 
 a common way to merge replicates of Hi-C experiments to increase the validity of the experiment.

Input
-----

Parameters
__________
- two or matrices of the same shape.

Output
------
The summed matrix.

| For more information about HiCExplorer please consider our documentation on readthedocs.io_

.. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html
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    <expand macro="citations" />
</tool>