Mercurial > repos > bgruening > hicexplorer_hicsummatrices
comparison hicSumMatrices.xml @ 21:36dfa2825a59 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
| author | iuc |
|---|---|
| date | Wed, 18 Oct 2023 10:15:10 +0000 |
| parents | 5aa5ef83f975 |
| children |
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| 20:2a57fc28ef3a | 21:36dfa2825a59 |
|---|---|
| 18 | 18 |
| 19 && mv 'matrix.$extension' matrix | 19 && mv 'matrix.$extension' matrix |
| 20 ]]> | 20 ]]> |
| 21 </command> | 21 </command> |
| 22 <inputs> | 22 <inputs> |
| 23 <expand macro='matrix_h5_cooler_multiple_macro' /> | 23 <expand macro="matrix_h5_cooler_multiple_macro" /> |
| 24 </inputs> | 24 </inputs> |
| 25 <outputs> | 25 <outputs> |
| 26 <data name="outFileName" from_work_dir="matrix" format_source='matrix_h5_cooler_multiple' /> | 26 <data name="outFileName" from_work_dir="matrix" format_source="matrix_h5_cooler_multiple" /> |
| 27 </outputs> | 27 </outputs> |
| 28 <tests> | 28 <tests> |
| 29 <test> | 29 <test> |
| 30 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" /> | 30 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.h5,small_test_matrix.h5" /> |
| 31 <output name="outFileName" ftype="h5"> | 31 <output name="outFileName" ftype="h5"> |
| 32 <assert_contents> | 32 <assert_contents> |
| 33 <has_h5_keys keys='intervals,matrix' /> | 33 <has_h5_keys keys="intervals,matrix" /> |
| 34 </assert_contents> | 34 </assert_contents> |
| 35 </output> | 35 </output> |
| 36 </test> | 36 </test> |
| 37 <test> | 37 <test> |
| 38 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" /> | 38 <param name="matrix_h5_cooler_multiple" value="small_test_matrix.cool,small_test_matrix.cool" /> |
| 39 <output name="outFileName" ftype="cool"> | 39 <output name="outFileName" ftype="cool"> |
| 40 <assert_contents> | 40 <assert_contents> |
| 41 <has_h5_keys keys='bins,chroms,indexes,pixels' /> | 41 <has_h5_keys keys="bins,chroms,indexes,pixels" /> |
| 42 </assert_contents> | 42 </assert_contents> |
| 43 </output> | 43 </output> |
| 44 </test> | 44 </test> |
| 45 </tests> | 45 </tests> |
| 46 <help><![CDATA[ | 46 <help><![CDATA[ |