Mercurial > repos > bgruening > hicexplorer_hictraintadclassifier
diff test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 0:1ff19476c5a5 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
| author | bgruening |
|---|---|
| date | Wed, 18 Oct 2023 16:22:57 +0000 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report Wed Oct 18 16:22:57 2023 +0000 @@ -0,0 +1,13 @@ +# Created with chicQualityControl version 3.7.2 +# QC report for matrices: 0_matrix.cool 1_matrix.cool +#Sparsity threshold for rejection: sparsity <= 0.05 are rejected. + +Number of reference points: 43 +Number of accepted reference points: 35 +Number of rejected reference points: 8 +Number of faulty reference points: 0 + + +A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. +It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. +Please check the results of hicInfo to validate this for your data.