Mercurial > repos > bgruening > hicexplorer_hictransform
annotate test-data/raw_qc_report @ 5:b173dffa73c6 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dddc0b9035b8edadfd45d74b01aeca245c2725d7
author | iuc |
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date | Fri, 27 Apr 2018 08:42:25 -0400 |
parents | 303558d3bc11 |
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rev | line source |
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1
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
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1 |
3
303558d3bc11
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 0456f085bac2c88b8cbddfcf12b02776d2a0d457
bgruening
parents:
1
diff
changeset
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2 File matrix.h5 |
1
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
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3 Pairs considered 983 |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
4 Min rest. site distance 300 |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
5 Max library insert size 1000 |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
6 |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
7 # count (percentage w.r.t. total sequenced reads) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
8 Pairs mappable, unique and high quality 300 (30.52) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
9 Pairs used 215 (21.87) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
10 One mate unmapped 506 (51.48) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
11 One mate not unique 13 (1.32) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
12 One mate low quality 164 (16.68) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
13 |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
14 # count (percentage w.r.t. mappable, unique and high quality pairs) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
15 dangling end 0 (0.00) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
16 self ligation (removed) 0 (0.00) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
17 One mate not close to rest site 0 (0.00) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
18 same fragment 85 (28.33) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
19 self circle 0 (0.00) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
20 duplicated pairs 0 (0.00) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
21 |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
22 # count (percentage w.r.t. total valid pairs used) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
23 inter chromosomal 24 (11.16) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
24 short range < 20kb 61 (28.37) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
25 long range 130 (60.47) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
26 inward pairs 42 (19.53) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
27 outward pairs 66 (30.70) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
28 left pairs 48 (22.33) |
0c13bd882a1a
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058
iuc
parents:
diff
changeset
|
29 right pairs 35 (16.28) |