Mercurial > repos > bgruening > hicexplorer_hictransform

diff hicTransform.xml @ 17:27fe5cd1729c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 8586409c5f329eaf75902eedc3d29a6e82560788
author iuc
date Mon, 01 Jul 2024 19:54:05 +0000
parents f36828ebdc54
children
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--- a/hicTransform.xml	Wed Oct 18 10:24:58 2023 +0000
+++ b/hicTransform.xml	Mon Jul 01 19:54:05 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="hicexplorer_hictransform" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
+<tool id="hicexplorer_hictransform" name="@BINARY@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>transform a matrix to obs/exp, pearson and covariance matrices</description>
     <macros>
         <token name="@BINARY@">hicTransform</token>
@@ -18,9 +18,9 @@
         #if chroms:
             --chromosomes $chroms
         #end if
-        --outFileName 'matrix.$matrix_h5_cooler.ext'
+        --outFileName 'out_matrix.$matrix_h5_cooler.ext'
 
-        && mv 'matrix.$matrix_h5_cooler.ext' matrix
+        && mv 'out_matrix.$matrix_h5_cooler.ext' matrix
 ]]>
     </command>
     <inputs>