# HG changeset patch
# User iuc
# Date 1514906270 18000
# Node ID 0c13bd882a1af04723dadcee40c65f5fd12902d0
# Parent  369f6cb43a86191e233db3024d1994733873f683
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 8def073a083b0619e366436a067a614555190058

diff -r 369f6cb43a86 -r 0c13bd882a1a macros.xml
--- a/macros.xml	Sat Dec 30 09:19:19 2017 -0500
+++ b/macros.xml	Tue Jan 02 10:17:50 2018 -0500
@@ -11,7 +11,7 @@
 
     <xml name="citations">
         <citations>
-            <citation type="doi">10.5281/zenodo.1123667</citation>
+            <citation type="doi">10.5281/zenodo.1133705</citation>
             <yield />
         </citations>
     </xml>
diff -r 369f6cb43a86 -r 0c13bd882a1a test-data/raw_qc_report
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/raw_qc_report	Tue Jan 02 10:17:50 2018 -0500
@@ -0,0 +1,29 @@
+
+File	text_matrix.h5		
+Pairs considered	983		
+Min rest. site distance	300		
+Max library insert size	1000		
+
+#	count	(percentage w.r.t. total sequenced reads)
+Pairs mappable, unique and high quality	300	(30.52)
+Pairs used	215	(21.87)
+One mate unmapped	506	(51.48)
+One mate not unique	13	(1.32)
+One mate low quality	164	(16.68)
+
+#	count	(percentage w.r.t. mappable, unique and high quality pairs)
+dangling end	0	(0.00)
+self ligation (removed)	0	(0.00)
+One mate not close to rest site	0	(0.00)
+same fragment	85	(28.33)
+self circle	0	(0.00)
+duplicated pairs	0	(0.00)
+
+#	count	(percentage w.r.t. total valid pairs used)
+inter chromosomal	24	(11.16)
+short range < 20kb	61	(28.37)
+long range	130	(60.47)
+inward pairs	42	(19.53)
+outward pairs	66	(30.70)
+left pairs	48	(22.33)
+right pairs	35	(16.28)