Mercurial > repos > bgruening > hicexplorer_hicvalidatelocations
changeset 0:f011486cbaaa draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3b41d687ff30583540d055f6995de00530cca81d-dirty"
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hicValidateLocations.xml Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,74 @@ +<tool id="hicexplorer_hicvalidatelocations" name="@BINARY@" version="@WRAPPER_VERSION@.0"> + <description>validate detected loops with protein peaks.</description> + <macros> + <token name="@BINARY@">hicValidateLocations</token> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="exit_code"><![CDATA[ + + @BINARY@ + --data '$data' + --protein '$protein' + --method loops + --resolution '$resolution' + $addChrPrefixLoops + $addChrPrefixProtein + --outFileName outfile + ]]></command> + <inputs> + <param argument="--data" type="data" format='bed' + label="Loop file" + help="The loop file from hicDetectLoops. To use files from other sources, ' + 'please follow \'chr start end chr start end\' format." /> + <param argument="--protein" type="data" format='bed' + label="Loop file" + help="The loop file from hicDetectLoops. To use files from other sources, ' + 'please follow \'chr start end chr start end\' format." /> + <param argument="--resolution" type="integer" value="" + label="Used resolution" + help='The to be binned resolution.'/> + + <param name='addChrPrefixLoops' type='boolean' truevalue='--addChrPrefixLoops' falsevalue="" checked="false" label="Add chr prefix to loops." + help="Adding a \'chr\'-prefix to chromosome name of the loops."/> + + <param name='addChrPrefixProtein' type='boolean' truevalue='--addChrPrefixLoops' falsevalue="" checked="false" label="Add chr prefix to protein." + help="Adding a \'chr\'-prefix to chromosome name of the protein."/> + + </inputs> + <outputs> + <data name="statistic" from_work_dir="outfile_statistics" format="bed" label="${tool.name} on [${on_string}]: Statistic"/> + <data name="mergedLoops" from_work_dir="outfile_matched_locations" format="bed" label="${tool.name} on [${on_string}]: Matched locations"/> + </outputs> + <tests> + <test> + <param name="data" ftype='bed' value="hicValidateLocations/loops_1.bedgraph"/> + <param name="protein" ftype='bed' value="hicValidateLocations/GSM935376_hg19_Gm12878_Smc3.narrowPeak"/> + <param name="resolution" value="10000"/> + <param name="addChrPrefixLoops" value="True"/> + <output name="statistic" file="hicValidateLocations/overlap_smc3_statistics" ftype="bed" compare="sim_size" delta='40000'/> + <output name="mergedLoops" file="hicValidateLocations/overlap_smc3_matched_locations" ftype="bed" compare="sim_size" delta='40000'/> + </test> + </tests> + <help><![CDATA[ + +Validate locations +================== + +This script overlaps the loop locations with protein locations to determine the accuracy of the loop detection. +Loops need to have format as follows: + +`chr start end chr start end` + +The protein peaks need to be in narrowPeaks or broadPeak format. + +A protein match is successfull if at the bin of the x and y location a protein peak is overlapped. +A bin is assumed to have a protein if one or more protein peaks falling within the bin region. +The value of the protein is not considered, only match or non-match. + +For more information about HiCExplorer please consider our documentation on readthedocs.io_ + +.. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html +]]></help> + <expand macro="citations" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,699 @@ +<macros> + <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> + <token name="@WRAPPER_VERSION@">3.3.1</token> + <token name="@USE_RANGE@"> + #if $use_range.select_use_range == "yes_use_range": + --range $range_min:$range_max + #end if + </token> + + <xml name="requirements"> + <requirements> + <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement> + <yield /> + </requirements> + <version_command>@BINARY@ --version</version_command> + </xml> + + <token name="@CHROMOSOME_LIST@"> + #if $chromosome_list: + #set $chromosomes = [] + #for $chrom in $chromosome_list: + #silent $chromosomes.append("'%s'" % $chrom.chromosomes) + #end for + #set $chromosome_string = ' '.join($chromosomes) + --chromosomes $chromosome_string + #end if + </token> + + <xml name="chromosome_list"> + <repeat name="chromosome_list" min="0" title="Chromosomes to include" help="Chromosomes to include in the analysis. If not set, all chromosomes are included."> + <param argument="--chromosomes" type="text" value="" > + <validator type="empty_field" /> + </param> + </repeat> + </xml> + + <xml name="citations"> + <citations> + <citation type="doi">10.5281/zenodo.1133705</citation> + <yield /> + </citations> + </xml> + + <xml name="zMax"> + <param argument="--zMax" name="zMax" type="float" optional="true" label="zMax for 3D plot"/> <!-- this should only be enabled when both or 3d is selected for param whatToShow --> + </xml> + <xml name="use_range"> + <conditional name="use_range"> <!-- argparse specifies one argument of type min_range:max_range --> + <param name="select_use_range" type="select" label="Range restriction (in bp)" argument="--range" help="If given, only counts within the specified range are considered."> + <option value="no_use_range">No restriction</option> + <option value="yes_use_range">Only consider counts within a range</option> + </param> + <when value="no_use_range"/> + <when value="yes_use_range"> + <expand macro='range' /> + </when> + </conditional> + </xml> + + <xml name="range"> + <param name='range_min' label="Minimum range to consider interactions" type="integer" value="" min="0" help="The minimum range should be farer from the diagonal than median TAD size in order to reduce background interactions."/> + <param name='range_max' label="Maximum range to consider interactions" type="integer" value="" min="0"/> + </xml> + + <xml name="colormap"> + <param argument="--colorMap" name="colormap" type="select" optional="True" label="Color map to use for the heatmap" help=" Available color map names can be found here: https://matplotlib.org/examples/color/colormaps_reference.html"> + <option value="RdYlBu">RdYlBu</option> + <option value="Accent">Accent</option> + <option value="Spectral">Spectral</option> + <option value="Set1">Set1</option> + <option value="Set2">Set2</option> + <option value="Set3">Set3</option> + <option value="Dark2">Dark2</option> + <option value="Reds">Reds</option> + <option value="Oranges">Oranges</option> + <option value="Greens">Greens</option> + <option value="Blues">Blues</option> + <option value="Greys">Greys</option> + <option value="Purples">Purples</option> + <option value="Paired">Paired</option> + <option value="Pastel1">Pastel1</option> + <option value="Pastel2">Pastel2</option> + <option value="spring">spring</option> + <option value="summer">summer</option> + <option value="autumn">autumn</option> + <option value="winter">winter</option> + <option value="hot">hot</option> + <option value="coolwarm">coolwarm</option> + <option value="cool">cool</option> + <option value="seismic">seismic</option> + <option value="terrain">terrain</option> + <option value="ocean">ocean</option> + <option value="rainbow">rainbow</option> + <option value="bone">bone</option> + <option value="flag">flag</option> + <option value="prism">prism</option> + <option value="cubehelix">cubehelix</option> + <option value="binary">binary</option> + <option value="pink">pink</option> + <option value="gray">gray</option> + <option value="copper">copper</option> + <option value="BrBG">BrBG</option> + <option value="BuGn">BuGn</option> + <option value="BuPu">BuPu</option> + <option value="GnBu">GnBu</option> + <option value="OrRd">OrRd</option> + <option value="PiYG">PiYG</option> + <option value="PRGn">PRGn</option> + <option value="PuOr">PuOr</option> + <option value="PuRd">PuRd</option> + <option value="PuBu">PuBu</option> + <option value="RdBu">RdBu</option> + <option value="RdGy">RdGy</option> + <option value="RdPu">RdPu</option> + <option value="YlGn">YlGn</option> + <option value="PuBuGn">PuBuGn</option> + <option value="RdYlGn">RdYlGn</option> + <option value="YlGnBu">YlGnBu</option> + <option value="YlOrBr">YlOrBr</option> + <option value="YlOrRd">YlOrRd</option> + <option value="gist_gray">gist_gray</option> + <option value="gist_stern">gist_stern</option> + <option value="gist_earth">gist_earth</option> + <option value="gist_yarg">gist_yarg</option> + <option value="gist_ncar">gist_ncar</option> + <option value="gist_rainbow">gist_rainbow</option> + <option value="gist_heat">gist_heat</option> + <option value="gnuplot">gnuplot</option> + <option value="gnuplot2">gnuplot2</option> + <option value="CMRmap">CMRmap</option> + <option value="bwr">bwr</option> + <option value="hsv">hsv</option> + <option value="brg">brg</option> + <option value="jet">jet</option> + <option value="afmhot">afmhot</option> + <option value="plasma">plasma</option> + <option value="Accent_r">Accent reversed</option> + <option value="Spectral_r">Spectral reversed</option> + <option value="Set1_r">Set1 reversed</option> + <option value="Set2_r">Set2 reversed</option> + <option value="Set3_r">Set3 reversed</option> + <option value="Dark2_r">Dark2 reversed</option> + <option value="Reds_r">Reds reversed</option> + <option value="Oranges_r">Oranges reversed</option> + <option value="Greens_r">Greens reversed</option> + <option value="Blues_r">Blues reversed</option> + <option value="Greys_r">Greys reversed</option> + <option value="Purples_r">Purples reversed</option> + <option value="Paired_r">Paired reversed</option> + <option value="Pastel1_r">Pastel1 reversed</option> + <option value="Pastel2_r">Pastel2 reversed</option> + <option value="spring_r">spring reversed</option> + <option value="summer_r">summer reversed</option> + <option value="autumn_r">autumn reversed</option> + <option value="winter_r">winter reversed</option> + <option value="hot_r">hot reversed</option> + <option value="coolwarm_r">coolwarm reversed</option> + <option value="cool_r">cool reversed</option> + <option value="seismic_r">seismic reversed</option> + <option value="terrain_r">terrain reversed</option> + <option value="ocean_r">ocean reversed</option> + <option value="rainbow_r">rainbow reversed</option> + <option value="bone_r">bone reversed</option> + <option value="flag_r">flag reversed</option> + <option value="prism_r">prism reversed</option> + <option value="cubehelix_r">cubehelix reversed</option> + <option value="binary_r">binary reversed</option> + <option value="pink_r">pink reversed</option> + <option value="gray_r">gray reversed</option> + <option value="copper_r">copper reversed</option> + <option value="BrBG_r">BrBG reversed</option> + <option value="BuGn_r">BuGn reversed</option> + <option value="BuPu_r">BuPu reversed</option> + <option value="GnBu_r">GnBu reversed</option> + <option value="OrRd_r">OrRd reversed</option> + <option value="PiYG_r">PiYG reversed</option> + <option value="PRGn_r">PRGn reversed</option> + <option value="PuOr_r">PuOr reversed</option> + <option value="PuRd_r">PuRd reversed</option> + <option value="PuBu_r">PuBu reversed</option> + <option value="RdBu_r">RdBu reversed</option> + <option value="RdGy_r">RdGy reversed</option> + <option value="RdPu_r">RdPu reversed</option> + <option value="YlGn_r">YlGn reversed</option> + <option value="PuBuGn_r">PuBuGn reversed</option> + <option value="RdYlBu_r" selected="True">RdYlBu reversed</option> + <option value="RdYlGn_r">RdYlGn reversed</option> + <option value="YlGnBu_r">YlGnBu reversed</option> + <option value="YlOrBr_r">YlOrBr reversed</option> + <option value="YlOrRd_r">YlOrRd reversed</option> + <option value="gist_gray_r">gist_gray reversed</option> + <option value="gist_stern_r">gist_stern reversed</option> + <option value="gist_earth_r">gist_earth reversed</option> + <option value="gist_yarg_r">gist_yarg reversed</option> + <option value="gist_ncar_r">gist_ncar reversed</option> + <option value="gist_rainbow_r">gist_rainbow reversed</option> + <option value="gist_heat_r">gist_heat reversed</option> + <option value="gnuplot_r">gnuplot reversed</option> + <option value="gnuplot2_r">gnuplot2 reversed</option> + <option value="CMRmap_r">CMRmap reversed</option> + <option value="bwr_r">bwr reversed</option> + <option value="hsv_r">hsv reversed</option> + <option value="brg_r">brg reversed</option> + <option value="jet_r">jet reversed</option> + <option value="afmhot_r">afmhot reversed</option> + <option value="plasma_r">plasma reversed</option> + </param> + </xml> + + <xml name="multiple_input_matrices"> + <repeat name="input_files" title="Hi-C Matrix files" min="2"> + <param name="matrix" type="data" format="h5,cool" + label="Hi-C Matrix file" + help=""/> + <param name="mlabel" type="text" size="30" optional="true" value="" + label="Label" + help="Label to use in the output. If not given the dataset name will be used instead."/> + </repeat> + </xml> + + <token name="@multiple_input_matrices@"> + #set $matrices = [] + #set $mlabels = [] + #for $counter, $i in enumerate($input_files): + ln -s '$i.matrix' '${counter}_matrix.$i.matrix.ext'; + #silent $matrices.append( '\'%s_matrix.%s\'' % ($counter, $i.matrix.ext)) + + #if str($i.mlabel.value) != "": + #set $mlabels += ['\'%s\'' % ($i.mlabel.value)] + #else + #set $mlabels += ['\'%s\'' % ($i.matrix.name)] + #end if + #end for + #set $mlabels = ' '.join($mlabels) + #set $matrices = ' '.join($matrices) + </token> + + <token name="@ESCAPE_IDENTIFIER_FILE@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($file.element_identifier))]]></token> + <token name="@ESCAPE_IDENTIFIER_MATRIX@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($matrix.element_identifier))]]></token> + <token name="@ESCAPE_IDENTIFIER_M@"><![CDATA[re.sub('[^\s\w\-\.]', '_', str($m.element_identifier))]]></token> + + <xml name="region"> + <param name="region" type="text" label="Region of the genome to limit the operation" + help="The format is chr:start-end. Also valid is just to specify a chromosome, for example chr10:10-500" argument="--region"/> + </xml> + + + + <xml name="kmeans_clustering"> + <conditional name="used_multiple_regions"> + <param name="used_multiple_regions_options" type="select" + label="Did you compute the matrix with more than one groups of regions?" + help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions."> + <option value="yes">Yes, I used multiple groups of regions</option> + <option value="no">No, I used only one group</option> + </param> + <when value="no"> + <conditional name="clustering"> + <param name="clustering_options" type="select" label="Clustering algorithm"> + <option value="none">No clustering</option> + <option value="kmeans">Kmeans clustering</option> + </param> + <when value="kmeans"> + <param name="k_kmeans" type="integer" value="0" label="Number of clusters to compute" + help="When this option is set, then the matrix is split into clusters using the kmeans algorithm. Only works for data that is not grouped, otherwise only the first group will be clustered. If more specific clustering methods are required it is advisable to save the underlying matrix and run the clustering using other software. The plotting of the clustering may fail (Error: Segmentation fault) if a cluster has very few members compared to the total number or regions. (default: None)."/> + </when> + <when value="none" /> + </conditional> + </when> + <when value="yes" /> + </conditional> + </xml> + + <token name="@KMEANS_CLUSTERING@"> + #if $advancedOpt.used_multiple_regions.used_multiple_regions_options == 'no': + #if $advancedOpt.used_multiple_regions.clustering.clustering_options == 'kmeans': + #if int($advancedOpt.used_multiple_regions.clustering.k_kmeans) > 0: + --kmeans $advancedOpt.used_multiple_regions.clustering.k_kmeans + #end if + #end if + #end if + </token> + + <xml name="samFlag"> + <param name="samFlag" type="integer" optional="true" value="" + label="Filter reads based on the SAM flag" + help= "For example to get only reads that are the first mate use a flag of 64. This is useful to count properly paired reads only once, otherwise the second mate will be also considered for the coverage. (--samFlag)"/> + </xml> + <xml name="plotNumbers"> + <param name="plotNumbers" type="boolean" truevalue="--plotNumbers" falsevalue="" + label="Plot the correlation value" + help="If set, then the correlation number is plotted on top of the heatmap. (--plotNumbers)"/> + </xml> + <xml name="doNotExtendPairedEnds"> + <param name="doNotExtendPairedEnds" type="boolean" truevalue="--doNotExtendPairedEnds" falsevalue="" + label="Do not extend paired ends" + help="If set, reads are not extended to match the fragment length reported in the BAM file, instead they will be extended to match the fragment length. Default is to extend the reads if paired end information is available. (--doNotExtendPairedEnds)"/> + </xml> + + <xml name="ignoreDuplicates"> + <param name="ignoreDuplicates" type="boolean" truevalue="--ignoreDuplicates" falsevalue="" + label="Ignore duplicates" + help="If set, reads that have the same orientation and start position will be considered only once. If reads are paired, the mate position also has to coincide to ignore a read. (--ignoreDuplicates)" /> + </xml> + + <xml name="minMappingQuality"> + <param argument="--minMappingQuality" type="integer" optional="true" value="" min="1" + label="Minimum mapping quality" + help= "If set, only reads that have a mapping quality score higher than the given value are considered. + *Note* Bowtie's Mapping quality is related to uniqueness: the higher the score, the more unique is a read. + A mapping quality defined by Bowtie of 10 or less indicates that there is at least a 1 in 10 chance that the read truly originated elsewhere."/> + </xml> + + <xml name="skipZeros"> + <param name="skipZeros" type="boolean" truevalue="--skipZeros" falsevalue="" + label ="Skip zeros" + help ="If set, then zero counts that happen for *all* BAM files given are ignored. This might have the effect that fewer regions are considered than indicated in the option where the number of samples is defined. (--skipZeros)" /> + </xml> + + <xml name="fragmentLength"> + <param name="fragmentLength" type="integer" value="300" min="1" + label="Fragment length used for the sequencing" + help ="If paired-end reads are used, the fragment length is computed from the BAM file. (--fragmentLength)"/> + </xml> + + <xml name="scaleFactor"> + <param name="scaleFactor1" type="float" value="1" label="Scale factor for treatment" help="(--scaleFactors)"/> + <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)"/> + </xml> + + <xml name="xMax"> + <param argument="--xMax" name="xMax" type="integer" optional="true" value="" + label="Max value for the x-axis in counts per bin" /> + </xml> + + <xml name="filterThreshold"> + <param argument="--filterThreshold" name="filterThreshold_low" type="float" value="-1.5" + label="Remove bins of low coverage" help="e.g. -1.5; Both Thresholds needs to be set to take effect."/> + + <param argument="--filterThreshold" name="filterThreshold_large" type="float" value="5.0" + label="Remove bins of large coverage" help="e.g. 5; Both Thresholds needs to be set to take effect."/> + </xml> + + + <xml name="pseudocount"> + <param name="pseudocount" type="float" value="1" label="Pseudocount" help="Small number to avoid dividing by zero."/> + </xml> + <xml name='matrix_h5_cooler_macro'> + <param name='matrix_h5_cooler' type="data" format="h5,cool" + label="Matrix to compute on"/> + </xml> + <xml name='matrix_h5_cooler_multiple_macro'> + <param name='matrix_h5_cooler_multiple' type="data" format="h5,cool" + label="Matricies to compute on" multiple="true"/> + </xml> + + + + <xml name='convertFormat_single_macro'> + <conditional name="inputFormat_conditional"> + <param name="inputFormat_selector" type="select" label="Choose input file type"> + <option value="optionCool" selected="True">cool</option> + <option value="optionH5">h5</option> + <!-- <option value="optionHic">hic</option> --> + <option value="optionHomer">Homer</option> + <option value="optionHicpro">HiCPro</option> + </param> + <when value="optionCool"> + <expand macro='matrix_h5_cooler_macro' /> + <param name='correctionName' type='text' label='Correction factors column name'/> + <param name='correctionDivision' type="boolean" truevalue="yes" falsevalue="" label='Apply correction factors with a division instead multiplication'/> + <param name='chromosome' type='text' label='Load only one chromosome'/> + <param name='loadRawValues' type="boolean" truevalue="yes" falsevalue="" label='Load raw data'/> + + </when> + <when value="optionH5"> + <expand macro='matrix_h5_cooler_macro' /> + </when> + <!-- <when value="optionHic"> + <param name='matrixHic' type='data' format='binary' label='.hic matrix'/> + <param name='resolutions' type='text' label='List of resolutions'/> + </when> --> + + <when value="optionHomer"> + <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix'/> + </when> + + <when value="optionHicpro"> + <param name='matrixHicpro' type='data' format='txt' label='.hic matrix'/> + <param name='bedHicpro' type='data' format='bed' label='HicPro bed file'/> + </when> + </conditional> + </xml> + + <xml name='convertFormat_multiple_macro'> + <conditional name="inputFormat_conditional"> + <param name="inputFormat_selector" type="select" label="Choose input file type"> + <option value="optionCool" selected="True">cool</option> + <option value="optionH5">h5</option> + <option value="optionHomer">Homer</option> + <option value="optionHicpro">HiCPro</option> + </param> + <when value="optionCool"> + <expand macro='matrix_h5_cooler_multiple_macro' /> + <param name='correctionName' type='text' label='Correction factors column name'/> + <param name='correctionDivision' type="boolean" truevalue="yes" falsevalue="" label='Apply correction factors with a division instead multiplication'/> + <param name='chromosome' type='text' label='Load only one chromosome'/> + <param name='loadRawValues' type="boolean" truevalue="yes" falsevalue="" label='Load raw data'/> + + </when> + <when value="optionH5"> + <expand macro='matrix_h5_cooler_multiple_macro' /> + </when> + + <when value="optionHomer"> + <param name='matrixHomer' type='data' format='txt' label='Homer interaction matrix' multiple="true"/> + </when> + + <when value="optionHicpro"> + <param name='matrixHicpro' type='data' format='txt' label='.hic matrix' multiple="true"/> + <param name='bedHicpro' type='data' format='bed' label='HicPro bed file' multiple="true"/> + </when> + </conditional> + </xml> + <xml name='convertFormat_single_output_macro'> + <!-- <filter>outputSingleMultiple_conditional.inputFormat_conditional.inputFormat_selector == 'optionCool'</filter> --> + + <conditional name="outputFormat_conditional"> + <param name="outputFormat_selector" type="select" label="Choose output file type"> + <option value="cool" selected="True">cool</option> + <option value="h5">h5</option> + <option value="homer">Homer</option> + <option value="ginteractions">ginteractions</option> + + </param> + <when value="cool"> + <param name='storeAppliedCorrection' type="boolean" truevalue="yes" falsevalue="" label='Store applied correction factors in column count'/> + <param name='enforceInteger' type="boolean" truevalue="yes" falsevalue="" label='Enforce integer for count column'/> + </when> + <when value='h5'/> + <when value='homer'/> + <when value='ginteractions'/> + + </conditional> + </xml> + <token name="@REFERENCES@"> + +.. class:: infomark + +For more information on the tools, please visit our `help site`_. + +If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com + +This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_. + +.. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/ +.. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de +.. _help site: https://hicexplorer.readthedocs.org + + </token> + + + <xml name="multiple_input_bams"> + <repeat name="input_files" title="BAM files" min="2"> + <param name="bamfile" type="data" format="bam" + label="Bam file" + help="The BAM file must be sorted."/> + <param name="label" type="text" size="30" optional="true" value="" + label="Label" + help="Label to use in the output. If not given the dataset name will be used instead."/> + </repeat> + </xml> + + <xml name="multiple_input_bigwigs"> + <repeat name="input_files" title="BigWig files" min="2"> + <param name="bigwigfile" type="data" format="bigwig" + label="Bigwig file" + help="The Bigwig file must be sorted."/> + <param name="label" type="text" size="30" optional="true" value="" + label="Label" + help="Label to use in the output. If not given the dataset name will be used instead."/> + </repeat> + </xml> + + <xml name="plotTitle"> + <param name="plotTitle" type="text" value="" size="30" optional="True" + label="Title of the plot" + help="Title of the plot, to be printed on top of the generated image. (--plotTitle)" /> + </xml> + + <token name="@multiple_input_bams@"> + #import tempfile + #set $temp_dir = os.path.abspath(tempfile.mkdtemp()) + #set files=[] + #set labels=[] + #for $i in $input_files: + #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir ) + #set $temp_input_path = $temp_input_handle.name + #silent $temp_input_handle.close() + #silent os.system("ln -s %s %s.bam" % (str($i.bamfile), $temp_input_path)) + #silent os.system("ln -s %s %s.bam.bai" % (str($i.bamfile.metadata.bam_index), $temp_input_path)) + #silent $files.append('%s.bam' % $temp_input_path) + + ##set $files += [str($i.bamfile)] + #if str($i.label.value) != "": + #set $labels += ["\"%s\"" % ($i.label.value)] + #else + #set $labels += ["\"%s\"" % ($i.bamfile.name)] + #end if + #end for + </token> + + <token name="@multiple_input_bigwigs@"> + #import tempfile + #set $temp_dir = os.path.abspath(tempfile.mkdtemp()) + #set files=[] + #set labels=[] + #for $i in $input_files: + #set $temp_input_handle = tempfile.NamedTemporaryFile( dir=$temp_dir ) + #set $temp_input_path = $temp_input_handle.name + #silent $temp_input_handle.close() + #silent os.system("ln -s %s %s.bw" % (str($i.bigwigfile), $temp_input_path)) + #silent $files.append('%s.bw' % $temp_input_path) + + ##set $files += [str($i.bigwigfile)] + #if str($i.label.value) != "": + #set $labels += ["\"%s\"" % ($i.label.value)] + #else + #set $labels += ["\"%s\"" % ($i.bigwigfile.name)] + #end if + #end for + </token> + + <xml name="reference_genome_source"> + <conditional name="source"> + <param name="ref_source" type="select" label="Reference genome"> + <option value="cached">locally cached</option> + <option value="history">in your history</option> + </param> + <when value="cached"> + <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> + <options from_data_table="deepTools_seqs"> + <filter type="sort_by" column="1" /> + <validator type="no_options" message="No indexes are available." /> + </options> + </param> + </when> + <when value="history"> + <param name="input1" type="data" format="twobit" label="Select a reference dataset in 2bit format" /> + </when> + </conditional> + </xml> + + <token name="@reference_genome_source@"> + #if $source.ref_source=="history": + --genome $source.input1 + #else: + --genome "${source.input1_2bit.fields.path}" + #end if + </token> + + <xml name="effectiveGenomeSize"> + <conditional name="effectiveGenomeSize"> + <param name="effectiveGenomeSize_opt" type="select" label="Effective genome size" + help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded. + Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. + See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes."> + <option value="93260000">ce10 (93260000)</option> + <option value="121400000">dm3 (121400000)</option> + <option value="2451960000" selected="true">hg19 (2451960000)</option> + <option value="2150570000">mm9 (2150570000)</option> + <option value="specific">user specified</option> + </param> + <when value="specific"> + <param name="effectiveGenomeSize" type="integer" value="" label="Effective genome size" help="e.g. ce10: 93260000, dm3: 121400000, hg19: 2451960000, mm9: 2150570000"/> + </when> + <when value="2150570000" /> + <when value="2451960000" /> + <when value="121400000" /> + <when value="93260000" /> + </conditional> + </xml> + + <xml name="image_file_format"> + <param name="outFileFormat" type="select" label="Image file format"> + <option value="png" selected="true">png</option> + <option value="pdf">pdf</option> + <option value="svg">svg</option> + <option value="eps">eps</option> + <option value="emf">emf</option> + </param> + </xml> + + <xml name="missingDataAsZero"> + <param name="missingDataAsZero" type="boolean" truevalue="yes" falsevalue="no" checked="True" + label ="Treat missing data as zero" + help ="This parameter determines if missing data should be treated as zeros. If unchecked, missing data will be ignored and not included in the output file. Missing data is defined as those regions for which both BAM files have 0 reads." /> + </xml> + + <xml name="input_save_matrix_values"> + <param name="saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/> + </xml> + + <xml name="input_graphic_output_settings"> + <conditional name="output" > + <param name="showOutputSettings" type="select" label="Show advanced output settings" > + <option value="no" selected="true">no</option> + <option value="yes">yes</option> + </param> + <when value="no" /> + <when value="yes"> + <yield /> + <param name="saveData" type="boolean" label="Save the data underlying the average profile"/> + <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/> + </when> + </conditional> + </xml> + + <xml name="input_image_file_format"> + <param name="outFileFormat" type="select" label="Image file format"> + <option value="png" selected="true">png</option> + <option value="pdf">pdf</option> + <option value="svg">svg</option> + <option value="eps">eps</option> + <option value="emf">emf</option> + </param> + </xml> + + <xml name="output_image_file_format"> + <data format="png" name="outFileName" label="${tool.name} image"> + <change_format> + <when input="output.outFileFormat" value="pdf" format="pdf" /> + <when input="output.outFileFormat" value="svg" format="svg" /> + <when input="output.outFileFormat" value="eps" format="eps" /> + <when input="output.outFileFormat" value="emf" format="emf" /> + </change_format> + </data> + </xml> + + <xml name="output_save_matrix_values"> + <data format="tabular" name="outFileNameMatrix" label="${tool.name} on ${on_string}: Heatmap values"> + <filter> + (( + output['showOutputSettings'] == 'yes' and + output['saveMatrix'] is True + )) + </filter> + </data> + </xml> + + <xml name="output_graphic_outputs"> + <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column"> + <filter> + (( + output['showOutputSettings'] == 'yes' and + output['saveData'] is True + )) + </filter> + </data> + <data format="bed" name="outFileSortedRegions" label="${tool.name} on ${on_string}: sorted/filtered regions"> + <filter> + (( + output['showOutputSettings'] == 'yes' and + output['saveSortedRegions'] is True + )) + </filter> + </data> + </xml> + + <xml name="track_input_h5_macro"> + <param name="track_input_h5" type="data" format="h5, cool" label="Track file h5 or cool format"/> + </xml> + <xml name="track_input_bed_macro"> + <param name="track_input_bed" type="data" format="bed" label="Track file bed format"/> + </xml> + <xml name="track_input_bedgraph_macro"> + <param name="track_input_bedgraph" type="data" format="bedgraph" label="Track file bedgraph format"/> + </xml> + <xml name="track_input_bigwig_macro"> + <param name="track_input_bigwig" type="data" format="bigwig" label="Track file bigwig format"/> + </xml> + <xml name="track_input_bedgraph_matrix_macro"> + <param name="track_input_bedgraph_matrix" type="data" format="bedgraph" label="Track file bigwig format"/> + </xml> + <xml name="track_input_tabular_macro"> + <param name="track_input_tabular" type="data" format="tabular" label="Track file tabular format"/> + </xml> + <xml name="plot_title"> + <param name="title" type="text" optional="true" label="Plot title"/> + </xml> + + <xml name="spacer_macro"> + <param name="spacer_width" type="float" value="" optional="True" + label="Include spacer at the end of the track." help="Width of the spacer." /> + </xml> + <xml name="fontsize_macro"> + <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> + </xml> +</macros>
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0.999101928660 0.800000000000 0.000168117935 +419000 111.237543251788 0.998747179894 1.200000000000 0.000180126359 +420000 71.543683033431 0.997956420620 1.200000000000 0.000189132677 +421000 67.274290337697 0.997653699455 1.600000000000 0.000204143206 +422000 64.705995027380 0.997311685980 1.600000000000 0.000225157948 +423000 101.434205484627 0.998031769527 1.400000000000 0.000258181114 +424000 86.889493446039 0.997600073281 1.400000000000 0.000270189538 +425000 122.557196728006 0.998314024248 1.200000000000 0.000267187432 +426000 93.483885085263 0.997741316659 1.200000000000 0.000273191644 +427000 84.930336242959 0.997433149990 1.200000000000 0.000282197962 +428000 100.859430667462 0.997863168223 1.400000000000 0.000279195856 +429000 78.275017393528 0.997082844309 1.200000000000 0.000294206386 +430000 101.986903284809 0.997906534850 1.400000000000 0.000276193750 +431000 70.287468861307 0.996997134263 1.800000000000 0.000273191644 +432000 84.841830499044 0.997855862208 1.400000000000 0.000234164266 +433000 79.861022088078 0.997733754394 1.400000000000 0.000234164266 +434000 83.290300490706 0.998104938852 1.200000000000 0.000204143206 +435000 75.026333069511 0.997834911529 0.800000000000 0.000210147418 +436000 90.616420661957 0.998155261017 1.000000000000 0.000216151630 +437000 98.178106096554 0.998272810314 1.000000000000 0.000222155842 +438000 76.064351498450 0.998018599283 1.000000000000 0.000195136889 +439000 77.557972858699 0.998204121542 1.000000000000 0.000180126359 +440000 84.343196302209 0.998264498130 1.200000000000 0.000189132677 +441000 70.480237483092 0.997902204548 0.800000000000 0.000189132677 +442000 87.265382444166 0.998244213785 1.400000000000 0.000198138995 +443000 108.392515295592 0.998432747334 1.400000000000 0.000222155842 +444000 82.443622273366 0.997719903159 1.400000000000 0.000243170584 +445000 70.933399279725 0.997396373546 1.400000000000 0.000243170584 +446000 95.161892262226 0.998095770809 1.600000000000 0.000234164266 +447000 124.614672839908 0.998565069417 1.200000000000 0.000231162160 +448000 77.860490008359 0.997704488044 1.400000000000 0.000231162160 +449000 65.217115835699 0.997403641809 1.400000000000 0.000219153736 +450000 75.445932132698 0.998007293338 1.200000000000 0.000198138995 +451000 95.181162634818 0.998473187366 1.000000000000 0.000186130571 +452000 94.977236808895 0.998461455130 1.000000000000 0.000189132677 +453000 71.519354123232 0.997988008873 1.000000000000 0.000186130571 +454000 75.038048093362 0.998148510684 1.000000000000 0.000183128465 +455000 66.094167095466 0.997699897371 1.000000000000 0.000198138995 +456000 111.325708146664 0.998498182775 1.000000000000 0.000216151630 +457000 102.171886886530 0.998454607629 1.000000000000 0.000204143206 +458000 88.125308869888 0.998313915544 1.000000000000 0.000192134783 +459000 70.605027521073 0.997930191387 0.800000000000 0.000189132677 +460000 100.268739339170 0.998772290781 0.600000000000 0.000159111617 +461000 74.543018827171 0.998473634038 0.800000000000 0.000147103193 +462000 63.337319446090 0.998204073767 0.800000000000 0.000147103193 +463000 117.089896011864 0.999027727546 0.800000000000 0.000147103193 +464000 91.138003901288 0.998496746777 1.800000000000 0.000177124253 +465000 92.914491189803 0.998350787907 1.800000000000 0.000198138995 +466000 52.209334348546 0.997159438011 2.400000000000 0.000192134783 +467000 77.918569531358 0.998034146232 2.800000000000 0.000198138995 +468000 40.028010375624 0.996410794913 2.800000000000 0.000186130571 +469000 52.807401795042 0.997408431862 1.400000000000 0.000177124253 +470000 105.325058737937 0.998676526339 1.400000000000 0.000180126359 +471000 97.395447231439 0.998474152554 1.000000000000 0.000192134783 +472000 71.036732364957 0.998055374489 1.200000000000 0.000183128465 +473000 58.839853998831 0.997768804625 1.200000000000 0.000174122147 +474000 109.506948227434 0.998942877974 1.000000000000 0.000150105299 +475000 73.687080792836 0.998676219719 0.600000000000 0.000126088451 +476000 86.562200266338 0.998926533547 0.600000000000 0.000120084239 +477000 78.601283549403 0.998670347780 0.600000000000 0.000135094769 +478000 77.287682759273 0.998311780993 1.000000000000 0.000168117935 +479000 80.196363250368 0.998336155363 0.800000000000 0.000174122147 +480000 95.618679354949 0.998538823715 0.800000000000 0.000180126359 +481000 71.324679124414 0.998079961192 1.000000000000 0.000177124253 +482000 98.947326582471 0.998662082026 1.200000000000 0.000171120041 +483000 98.312778915279 0.998677055532 1.000000000000 0.000168117935 +484000 80.536358888257 0.998500685590 1.200000000000 0.000156109511 +485000 75.299149742118 0.998174557637 1.200000000000 0.000177124253 +486000 80.676043504302 0.998160484267 1.600000000000 0.000192134783 +487000 65.456290718619 0.997731312445 1.600000000000 0.000192134783 +488000 135.605664962437 0.998837097471 1.400000000000 0.000204143206 +489000 78.041126983216 0.997890938542 1.600000000000 0.000213149524 +490000 73.842941938827 0.998020155259 1.200000000000 0.000192134783 +491000 135.330452041151 0.998884251454 1.000000000000 0.000195136889 +492000 70.441325198247 0.997891524929 1.000000000000 0.000192134783 +493000 93.145208276513 0.998579085962 1.200000000000 0.000171120041 +494000 93.195291870240 0.998579645775 1.200000000000 0.000171120041 +495000 66.167995861224 0.997615723218 1.200000000000 0.000204143206 +496000 68.869469387443 0.998039511367 1.200000000000 0.000174122147 +497000 61.393255588548 0.997958646123 1.400000000000 0.000162113723 +498000 64.393702971434 0.998089554455 1.200000000000 0.000159111617 +499000 64.222140571019 0.998102497389 1.000000000000 0.000157610564 +500000 10.000000000000 1.000000000000 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 673.0 -22000 7.00000 +chr1 14285000 14308000 Eya1 673.0 7000 389.40000 +chr1 14310000 14322000 Eya1 673.0 21000 54.80000 +chr1 14361000 14407000 Eya1 673.0 106000 21.20000 +chr1 14426000 14432000 Eya1 673.0 131000 2.40000 +chr1 14447000 14455000 Eya1 673.0 154000 4.40000 +chr1 14460000 14465000 Eya1 673.0 164000 3.20000 +chr1 14491000 14500000 Eya1 673.0 199000 17.65000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,7 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 19077000 19114000 Tfap2d 472.0 20000 344.80000 +chr1 19125000 19129000 Tfap2d 472.0 35000 7.80000 +chr1 19134000 19139000 Tfap2d 472.0 45000 8.40000 +chr1 19141000 19238000 Tfap2d 472.0 144000 47.40000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,9 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 4472000 4503000 Sox17 810.0 15000 566.20000 +chr1 4507000 4516000 Sox17 810.0 28000 38.80000 +chr1 4520000 4531000 Sox17 810.0 43000 10.40000 +chr1 4533000 4543000 Sox17 810.0 55000 6.80000 +chr1 4562000 4593000 Sox17 810.0 105000 25.00000 +chr1 4664000 4669000 Sox17 810.0 181000 1.20000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 832.0 -22000 0.00000 +chr1 14285000 14308000 Eya1 832.0 7000 479.80000 +chr1 14310000 14322000 Eya1 832.0 21000 52.80000 +chr1 14361000 14407000 Eya1 832.0 106000 36.00000 +chr1 14426000 14432000 Eya1 832.0 131000 9.00000 +chr1 14447000 14455000 Eya1 832.0 154000 12.40000 +chr1 14460000 14465000 Eya1 832.0 164000 7.60000 +chr1 14491000 14500000 Eya1 832.0 199000 15.75000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,7 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 19077000 19114000 Tfap2d 800.0 20000 527.80000 +chr1 19125000 19129000 Tfap2d 800.0 35000 8.80000 +chr1 19134000 19139000 Tfap2d 800.0 45000 11.20000 +chr1 19141000 19238000 Tfap2d 800.0 144000 163.00000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,9 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 4472000 4503000 Sox17 978.0 15000 724.40000 +chr1 4507000 4516000 Sox17 978.0 28000 19.00000 +chr1 4520000 4531000 Sox17 978.0 43000 22.20000 +chr1 4533000 4543000 Sox17 978.0 55000 12.20000 +chr1 4562000 4593000 Sox17 978.0 105000 23.20000 +chr1 4664000 4669000 Sox17 978.0 181000 5.40000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/batch_mode_file_names.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,6 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed +MB-E10-5_chr1_chr1_4487435_4487435_Sox17_aggregated.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed +MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_aggregated.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 673.0 -22000 7.00000 +chr1 14285000 14308000 Eya1 673.0 7000 389.40000 +chr1 14310000 14322000 Eya1 673.0 21000 54.80000 +chr1 14361000 14407000 Eya1 673.0 106000 21.20000 +chr1 14426000 14432000 Eya1 673.0 131000 2.40000 +chr1 14447000 14455000 Eya1 673.0 154000 4.40000 +chr1 14460000 14465000 Eya1 673.0 164000 3.20000 +chr1 14491000 14500000 Eya1 673.0 199000 17.65000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicAggregateStatistic/regular_mode/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_aggregated.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Aggregated file, created with HiCExplorer's chicAggregateStatistic version 3.3 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative distance Raw target +chr1 14274000 14279000 Eya1 832.0 -22000 0.00000 +chr1 14285000 14308000 Eya1 832.0 7000 479.80000 +chr1 14310000 14322000 Eya1 832.0 21000 52.80000 +chr1 14361000 14407000 Eya1 832.0 106000 36.00000 +chr1 14426000 14432000 Eya1 832.0 131000 9.00000 +chr1 14447000 14455000 Eya1 832.0 154000 12.40000 +chr1 14460000 14465000 Eya1 832.0 164000 7.60000 +chr1 14491000 14500000 Eya1 832.0 199000 15.75000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,17 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,18 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00335 +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96904 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.21097 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.25281 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.10924 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.12863 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.32025 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.35033
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,13 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,14 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.25943 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.40802 +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.60118 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00004
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_chi2/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by chi2 test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.43072 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00105 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.12754 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.40725 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.36639 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.16231
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,18 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_accepted.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,13 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_results.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,14 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 19077000 19114000 Tfap2d 20000 472.00000 344.80000 800.00000 527.80000 0.27744 +chr1 19125000 19129000 Tfap2d 35000 472.00000 7.80000 800.00000 8.80000 0.45206 +chr1 19134000 19139000 Tfap2d 45000 472.00000 8.40000 800.00000 11.20000 0.65094 +chr1 19141000 19238000 Tfap2d 144000 472.00000 47.40000 800.00000 163.00000 0.00005
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_accepted.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/batch_mode_fisher_outfile/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_results.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.2-dev +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 4472000 4503000 Sox17 15000 810.00000 566.20000 978.00000 724.40000 0.44082 +chr1 4507000 4516000 Sox17 28000 810.00000 38.80000 978.00000 19.00000 0.00117 +chr1 4520000 4531000 Sox17 43000 810.00000 10.40000 978.00000 22.20000 0.16402 +chr1 4533000 4543000 Sox17 55000 810.00000 6.80000 978.00000 12.20000 0.37847 +chr1 4562000 4593000 Sox17 105000 810.00000 25.00000 978.00000 23.20000 0.46860 +chr1 4664000 4669000 Sox17 181000 810.00000 1.20000 978.00000 5.40000 0.30594
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_accepted.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,12 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,16 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/regular_mode_fisher/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_results.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,18 @@ +# Differential analysis result file of HiCExplorer's chicDifferentialTest version 3.3 +# This file contains the p-values computed by fisher test +# To test the smoothed (float) values they were rounded up to the next integer +# +# Alpha level 0.5 +# Degrees of freedom 1 +# +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Relative distance sum of interactions 1 target_1 raw sum of interactions 2 target_2 raw p-value +chr1 14274000 14279000 Eya1 -22000 673.00000 7.00000 832.00000 0.00000 0.00366 +chr1 14285000 14308000 Eya1 7000 673.00000 389.40000 832.00000 479.80000 0.96586 +chr1 14310000 14322000 Eya1 21000 673.00000 54.80000 832.00000 52.80000 0.23002 +chr1 14361000 14407000 Eya1 106000 673.00000 21.20000 832.00000 36.00000 0.34706 +chr1 14426000 14432000 Eya1 131000 673.00000 2.40000 832.00000 9.00000 0.24523 +chr1 14447000 14455000 Eya1 154000 673.00000 4.40000 832.00000 12.40000 0.23210 +chr1 14460000 14465000 Eya1 164000 673.00000 3.20000 832.00000 7.60000 0.56425 +chr1 14491000 14500000 Eya1 199000 673.00000 17.65000 832.00000 15.75000 0.38515
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicDifferentialTest/rejectedFilesList.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_H0_rejected.bed +FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_H0_rejected.bed +FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_H0_rejected.bed \ No newline at end of file
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Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Eya1_FL-E13-5_MB-E10-5_chr1_chr1_14300280.png has changed
Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Sox17_FL-E13-5_MB-E10-5_chr1_chr1_4487435.png has changed
Binary file test-data/cHi-C/chicPlotViewpoint/batchMode/two/Tfap2d_FL-E13-5_MB-E10-5_chr1_chr1_19093103.png has changed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,35 @@ +chr1 4487435 4487435 Sox17 +chr1 14300280 14300280 Eya1 +chr1 19093103 19093103 Tfap2d +chr1 24202042 24202042 Col9a1 +chr1 33776741 33776741 Rab23 +chr1 38684089 38684089 Aff3 +chr1 42753991 42753991 Pou3f3 +chr1 52176282 52176282 Stat1 +chr1 53118507 53118507 Mstn +chr1 57028178 57028178 Satb2 +chr1 59821123 59821123 Bmpr2 +chr1 66991630 66991630 Myl1 +chr1 74648029 74648029 Stk36 +chr1 74818466 74818466 Wnt6 +chr1 75356867 75356867 Des +chr1 77511663 77511663 Epha4 +chr1 78193711 78193711 Pax3 +chr1 89102386 89102386 Chrng +chr1 93355905 93355905 Per2 +chr1 93698054 93698054 Twist2 +chr1 107677300 107677300 Tnfrsf11a +chr1 120950196 120950196 Gli2 +chr1 122499064 122499064 En1 +chr1 127808791 127808791 Lypd1 +chr1 135934092 135934092 Fmod +chr1 136186581 136186581 MyoG +chr1 164004278 164006270 mm712 +chr1 164147754 164147754 Dnm3os +chr1 165243781 165243781 Prrx1 +chr1 165333772 165333772 Gorab +chr1 169619689 169619689 Lmx1a +chr1 182823250 182823250 Lefty2 +chr1 182865170 182865170 Lefty1 +chr1 188529871 188529871 Tgfb2 +chr1 194979306 194979306 Irf6
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_raw_filter Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,45 @@ +# Created with chicQualityControl version 3.3 +# Chromosome Start End Sparsity 0_matrix.cool Sparsity 1_matrix.cool +chr1 4487435 4487435 Sox17 0.14485514485514486 0.16083916083916083 +chr1 14300280 14300280 Eya1 0.14285714285714285 0.1938061938061938 +chr1 19093103 19093103 Tfap2d 0.1048951048951049 0.16683316683316685 +chr1 19198995 19198995 Tfap2b 0.01898101898101898 0.016983016983016984 +chr1 24202042 24202042 Col9a1 0.10589410589410589 0.12787212787212787 +chr1 33776741 33776741 Rab23 0.15484515484515485 0.2137862137862138 +chr1 38684089 38684089 Aff3 0.11588411588411589 0.11388611388611389 +chr1 42753991 42753991 Pou3f3 0.04995004995004995 0.07592407592407592 +chr1 52176282 52176282 Stat1 0.19080919080919082 0.22777222777222778 +chr1 52557292 52557292 Nab1 0.02197802197802198 0.024975024975024976 +chr1 53118507 53118507 Mstn 0.3116883116883117 0.37462537462537465 +chr1 57028178 57028178 Satb2 0.12287712287712288 0.14385614385614387 +chr1 59821123 59821123 Bmpr2 0.14085914085914086 0.16983016983016982 +chr1 66991630 66991630 Myl1 0.0919080919080919 0.09290709290709291 +chr1 74648029 74648029 Stk36 0.2777222777222777 0.3356643356643357 +chr1 74818466 74818466 Wnt6 0.29270729270729273 0.34165834165834164 +chr1 74838593 74838593 Wnt10a 0.00999000999000999 0.008991008991008992 +chr1 74998246 74998246 Ihh 0.008991008991008992 0.003996003996003996 +chr1 75356867 75356867 Des 0.18081918081918083 0.21678321678321677 +chr1 77511663 77511663 Epha4 0.15684315684315683 0.22277722277722278 +chr1 78193711 78193711 Pax3 0.24375624375624375 0.3096903096903097 +chr1 89102386 89102386 Chrng 0.16783216783216784 0.2217782217782218 +chr1 93355905 93355905 Per2 0.15384615384615385 0.16483516483516483 +chr1 93698054 93698054 Twist2 0.22277722277722278 0.23476523476523475 +chr1 94076918 94076918 Hdac4 0.0 0.0 +chr1 107677300 107677300 Tnfrsf11a 0.14685314685314685 0.16383616383616384 +chr1 120950196 120950196 Gli2 0.13986013986013987 0.2007992007992008 +chr1 122499064 122499064 En1 0.1008991008991009 0.11988011988011989 +chr1 127808791 127808791 Lypd1 0.18681318681318682 0.22977022977022976 +chr1 135934092 135934092 Fmod 0.3516483516483517 0.4145854145854146 +chr1 136186581 136186581 MyoG 0.07392607392607392 0.09090909090909091 +chr1 152313295 152313295 Prg4 0.00999000999000999 0.006993006993006993 +chr1 164004278 164006270 mm712 0.26173826173826176 0.2867132867132867 +chr1 164147754 164147754 Dnm3os 0.24875124875124874 0.24675324675324675 +chr1 165243781 165243781 Prrx1 0.36063936063936064 0.34065934065934067 +chr1 165333772 165333772 Gorab 0.36863136863136864 0.3956043956043956 +chr1 169619689 169619689 Lmx1a 0.11888111888111888 0.16783216783216784 +chr1 170362300 170362300 Pbx1 0.003996003996003996 0.002997002997002997 +chr1 180249284 180249284 Gm16586 0.0 0.0 +chr1 182823250 182823250 Lefty2 0.27472527472527475 0.33266733266733267 +chr1 182865170 182865170 Lefty1 0.25674325674325676 0.3086913086913087 +chr1 188529871 188529871 Tgfb2 0.13486513486513488 0.16583416583416583 +chr1 194979306 194979306 Irf6 0.12987012987012986 0.15284715284715283
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_rejected_filter Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +chr1 19198995 19198995 Tfap2b +chr1 52557292 52557292 Nab1 +chr1 74838593 74838593 Wnt10a +chr1 74998246 74998246 Ihh +chr1 94076918 94076918 Hdac4 +chr1 152313295 152313295 Prg4 +chr1 170362300 170362300 Pbx1 +chr1 180249284 180249284 Gm16586
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054 +chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655 +chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_1_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 +chr1 14480000 14488000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_2/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000 +chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605 +chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109 +chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783 +chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109 +chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_2_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 14274000 14279000 +chr1 14285000 14308000 +chr1 14310000 14322000 +chr1 14361000 14395000 +chr1 14491000 14500000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054 +chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655 +chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,7 @@ +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14295000 14298000 Eya1 832.0 -3000 0.05985576923100000002 0.06113759528369666629 4.79015312599299925012 49.79999999999999715783 +chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000 +chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891 +chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473 +chr1 14491000 14501000 Eya1 832.0 200000 0.02253605769199999720 0.00000000000003064216 41.39757163433100117800 18.75000000000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 +chr1 14480000 14488000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_3_target/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14295000 14298000 +chr1 14426000 14432000 +chr1 14447000 14455000 +chr1 14460000 14465000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14278000 Eya1 673.0 -26000 0.00832095096400000019 0.01042503066537725509 7.81112575817000021061 5.59999999999999964473 +chr1 14296000 14298000 Eya1 673.0 -3000 0.05794947993999999963 0.10421572859864158822 3.78135593591500018817 39.00000000000000000000 +chr1 14314000 14316000 Eya1 673.0 14000 0.01515601783000000008 0.05171206541410811042 3.19033393500999995496 10.19999999999999928946 +chr1 14317000 14319000 Eya1 673.0 17000 0.01456166419000000031 0.04670037874744681350 3.51709033858399999772 9.80000000000000071054 +chr1 14480000 14488000 Eya1 673.0 184000 0.01129271916799999900 0.00000005723969254134 19.28508294646199772160 7.59999999999999875655 +chr1 14491000 14501000 Eya1 673.0 200000 0.03068350668399999828 0.00000000000003064216 56.96782483342801128856 20.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19089000 19091000 Tfap2d 472.0 -3000 0.06101694915199999680 0.18835888966198111039 4.06818820852600016025 28.80000000000000071054 +chr1 19104000 19106000 Tfap2d 472.0 11000 0.02245762711799999950 0.11671915718551462149 3.62722049649999966903 10.59999999999999964473 +chr1 19109000 19114000 Tfap2d 472.0 18000 0.03940677966200000631 0.00080680261510490681 9.61739201792699915927 18.60000000000000142109 +chr1 19125000 19129000 Tfap2d 472.0 33000 0.01652542372999999884 0.00829653069244939978 7.28507499155399962376 7.79999999999999982236 +chr1 19133000 19138000 Tfap2d 472.0 41000 0.01949152542399999744 0.00041957482022692005 9.72184228688099949522 9.19999999999999928946 +chr1 19197000 19202000 Tfap2d 472.0 108000 0.01059322033899999863 0.00398884532051024809 10.24326734149200035517 5.00000000000000000000 +chr1 19227000 19233000 Tfap2d 472.0 137000 0.01186440677899999914 0.00244241040005155341 14.41899403645599875290 5.59999999999999964473 +chr1 19254000 19261000 Tfap2d 472.0 163000 0.01355932203300000069 0.00004326025137579848 19.68794216164500454624 6.39999999999999946709
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4509000 4515000 Sox17 810.0 23000 0.03432098765399999724 0.00000160319175224188 11.55191083898800030738 27.80000000000000071054 +chr1 4561000 4567000 Sox17 810.0 75000 0.01432098765400000029 0.00000102319718320310 11.23656007944399881637 11.59999999999999964473 +chr1 4585000 4590000 Sox17 810.0 98000 0.00987654320999999807 0.00037019878415911478 8.98479195802099894763 8.00000000000000000000 +chr1 4652000 4658000 Sox17 810.0 169000 0.00740740740700000008 0.00005538687174366785 11.12107213938599947767 6.00000000000000000000 +chr1 4499000 4500000 Sox17 810.0 12000 0.00987654320999999981 0.15859163588059266292 1.65903762227799989049 8.00000000000000000000 +chr1 4501000 4502000 Sox17 810.0 14000 0.00765432098799999957 0.17926099806325068720 1.57677828943600006895 6.20000000000000017764
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_significant_files.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 14274000 14278000 +chr1 14296000 14298000 +chr1 14314000 14319000 +chr1 14480000 14488000 +chr1 14491000 14501000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,13 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 19089000 19091000 +chr1 19104000 19106000 +chr1 19109000 19114000 +chr1 19125000 19129000 +chr1 19133000 19138000 +chr1 19197000 19202000 +chr1 19227000 19233000 +chr1 19254000 19261000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.2-dev +# chicSignificantInteractions/output_4_target/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed +# Mode: x-fold background with 1.5 +# Used p-value: 0.2 +# +chr1 4499000 4502000 +chr1 4509000 4515000 +chr1 4561000 4567000 +chr1 4585000 4590000 +chr1 4652000 4658000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_4_target_list.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_target.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_target.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14274000 14279000 Eya1 673.0 -26000 0.01040118870499999980 0.00284160000885891328 9.15400589712000112286 7.00000000000000000000 +chr1 14285000 14303000 Eya1 673.0 -1000 0.50282317979099999672 0.00136523720299208673 11.07298757284899970443 338.40000000000003410605 +chr1 14304000 14308000 Eya1 673.0 4000 0.05438335809800000364 0.04630738638109899163 4.54925916911999994596 36.60000000000000142109 +chr1 14310000 14322000 Eya1 673.0 11000 0.08142644873500000380 0.00000295000019367997 16.90046348151199850918 54.79999999999999715783 +chr1 14361000 14395000 Eya1 673.0 61000 0.01872213967299999823 0.00000368259652272496 14.85031269307799917101 12.60000000000000142109 +chr1 14491000 14500000 Eya1 673.0 199000 0.02622585438099999874 0.00000000000000932587 49.39210160776001146132 17.64999999999999857891
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19097000 19099000 Tfap2d 472.0 4000 0.04322033898299999788 0.18510915606880684603 3.09466471690400002359 20.39999999999999857891 +chr1 19103000 19106000 Tfap2d 472.0 11000 0.03305084745700000159 0.03717817323565530963 5.08894228542100002244 15.60000000000000142109 +chr1 19110000 19114000 Tfap2d 472.0 18000 0.03135593220400000047 0.00456343459440844423 7.84960476513000049437 14.79999999999999893419 +chr1 19126000 19129000 Tfap2d 472.0 33000 0.01271186440799999991 0.01781395819889997068 5.68520760692500015665 6.00000000000000000000 +chr1 19134000 19137000 Tfap2d 472.0 41000 0.01271186440799999991 0.00778984492262324579 6.25346808942800080899 6.00000000000000000000 +chr1 19162000 19198000 Tfap2d 472.0 69000 0.02966101695299999674 0.00000060908645727054 24.93693789855100106934 14.00000000000000532907
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4483000 4496000 Sox17 810.0 0 0.64098765432000004427 0.00000017949046104970 15.90973968251499925941 519.20000000000004547474 +chr1 4497000 4503000 Sox17 810.0 12000 0.04592592592699999698 0.00009501601454375841 8.17222136878799965132 37.19999999999999573674 +chr1 4507000 4516000 Sox17 810.0 23000 0.04790123456699999643 0.00000000479943529363 15.54534421085400097695 38.80000000000000426326 +chr1 4533000 4543000 Sox17 810.0 46000 0.00839506173000000022 0.00536916279076038450 5.36115769549400056349 6.79999999999999893419 +chr1 4562000 4565000 Sox17 810.0 75000 0.00814814814800000030 0.00087160464483748701 6.21039574622800039094 6.59999999999999964473 +chr1 4567000 4585000 Sox17 810.0 81000 0.00814814814699999987 0.00084968562666110081 6.38963961746400066488 6.60000000000000053291
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 14295000 14303000 Eya1 832.0 -1000 0.51754807692400006669 0.00019954744684358428 10.99424166368200062038 430.60000000000002273737 +chr1 14304000 14307000 Eya1 832.0 4000 0.03052884615399999862 0.12043367620410594387 2.40926082355099957510 25.39999999999999857891 +chr1 14311000 14322000 Eya1 832.0 11000 0.05841346153899999727 0.00001294028787446333 12.63215080382700250539 48.59999999999999431566 +chr1 14369000 14382000 Eya1 832.0 69000 0.00793269231000000123 0.00220510219722336309 6.44339861264899926852 6.59999999999999875655 +chr1 14391000 14407000 Eya1 832.0 106000 0.01201923077000000006 0.00000515283260571486 11.00547257592000072179 10.00000000000000000000 +chr1 14426000 14432000 Eya1 832.0 130000 0.01081730769300000110 0.00000042985602966006 13.72351582211000042832 9.00000000000000000000 +chr1 14447000 14455000 Eya1 832.0 149000 0.01490384615199999950 0.00000000000012301271 22.36493893927400122834 12.39999999999999857891 +chr1 14460000 14465000 Eya1 832.0 162000 0.00913461538499999934 0.00001124312488187673 12.15366029908999934150 7.59999999999999964473 +chr1 14491000 14500000 Eya1 832.0 199000 0.01893028846099999857 0.00000000000000932587 35.26961282318300305860 15.75000000000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 19077000 19082000 Tfap2d 800.0 -15000 0.01675000000000000100 0.00195382844240210574 8.20856302019300088091 13.40000000000000035527 +chr1 19083000 19095000 Tfap2d 800.0 0 0.41274999999999995026 0.00011621308769860228 18.49630381537900092326 330.19999999999998863132 +chr1 19096000 19114000 Tfap2d 800.0 3000 0.17700000000000001843 0.00042447176642534945 22.86014655871399980924 141.59999999999999431566 +chr1 19125000 19129000 Tfap2d 800.0 33000 0.01099999999999999936 0.00379145119303403444 4.83882643603000062171 8.80000000000000071054 +chr1 19135000 19139000 Tfap2d 800.0 43000 0.01175000000000000003 0.00015657417058367873 6.23967021246500053167 9.40000000000000035527 +chr1 19141000 19170000 Tfap2d 800.0 49000 0.02125000000000001193 0.00000543603606051324 15.65207577841900032922 17.00000000000000355271 +chr1 19195000 19208000 Tfap2d 800.0 105000 0.04900000000000001577 0.00000000000000000000 47.90516101420298866742 39.20000000000000284217 +chr1 19209000 19238000 Tfap2d 800.0 124000 0.09275000000000004075 0.00000000000000000000 112.06129567939001390187 74.20000000000000284217
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5/MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,9 @@ +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +#Chromosome Start End Gene Sum of interactions Relative position Relative interactions p-value x-fold Raw target +chr1 4472000 4492000 Sox17 978.0 0 0.66196319018500004994 0.00000000202165995056 17.41734930604599895787 647.40000000000009094947 +chr1 4493000 4496000 Sox17 978.0 6000 0.02576687116499999652 0.03614683764250059550 2.69049295166299984317 25.20000000000000284217 +chr1 4497000 4503000 Sox17 978.0 12000 0.03946830265799999848 0.00007297810251505332 7.02344214143100042946 38.60000000000000142109 +chr1 4520000 4531000 Sox17 978.0 37000 0.02269938650399999994 0.00000000003034350549 10.91808266157200080215 22.20000000000000284217 +chr1 4562000 4566000 Sox17 978.0 78000 0.00920245398800000058 0.00000732123325153378 7.15040494335099996448 9.00000000000000000000 +chr1 4569000 4593000 Sox17 978.0 93000 0.01022494887899999885 0.00001986913191398543 8.54218878677400006438 9.99999999999999822364 +chr1 4664000 4669000 Sox17 978.0 179000 0.00552147239400000052 0.00001416173948909361 8.93206575494200016863 5.40000000000000035527
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_significant_files.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,6 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed +MB-E10-5_chr1_chr1_4487435_4487435_Sox17_output_significant.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed +MB-E10-5_chr1_chr1_14300280_14300280_Eya1_output_significant.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_output_significant.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,13 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 14274000 14279000 +chr1 14285000 14308000 +chr1 14310000 14322000 +chr1 14361000 14407000 +chr1 14426000 14432000 +chr1 14447000 14455000 +chr1 14460000 14465000 +chr1 14491000 14500000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,9 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 19077000 19114000 +chr1 19125000 19129000 +chr1 19134000 19139000 +chr1 19141000 19238000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,11 @@ +# Significant interactions result file of HiCExplorer's chicSignificantInteractions version 3.3 +# targetFolder/FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed +# Mode: loose p-value with 0.5 +# Used p-value: 0.2 +# +chr1 4472000 4503000 +chr1 4507000 4516000 +chr1 4520000 4531000 +chr1 4533000 4543000 +chr1 4562000 4593000 +chr1 4664000 4669000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicSignificantInteractions/output_5_target_list.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_MB-E10-5_chr1_chr1_4487435_4487435_Sox17_target.bed +FL-E13-5_MB-E10-5_chr1_chr1_14300280_14300280_Eya1_target.bed +FL-E13-5_MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d_target.bed \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/fileNames_one_matrix.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,3 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/fileNames_two_matrices.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,6 @@ +FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed +MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed +FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed +MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed +FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed +MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 673.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 14101000 14102000 Eya1 673.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 14102000 14103000 Eya1 673.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 14103000 14104000 Eya1 673.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 14104000 14105000 Eya1 673.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 14105000 14106000 Eya1 673.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 14106000 14107000 Eya1 673.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 14107000 14108000 Eya1 673.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 14108000 14109000 Eya1 673.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 14109000 14110000 Eya1 673.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 14110000 14111000 Eya1 673.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 14111000 14112000 Eya1 673.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 14112000 14113000 Eya1 673.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 14113000 14114000 Eya1 673.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 14114000 14115000 Eya1 673.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 14115000 14116000 Eya1 673.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 14116000 14117000 Eya1 673.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 14117000 14118000 Eya1 673.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 14118000 14119000 Eya1 673.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 14119000 14120000 Eya1 673.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 14120000 14121000 Eya1 673.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 14121000 14122000 Eya1 673.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 14122000 14123000 Eya1 673.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 14123000 14124000 Eya1 673.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 14124000 14125000 Eya1 673.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 14125000 14126000 Eya1 673.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 14126000 14127000 Eya1 673.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 14127000 14128000 Eya1 673.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 14128000 14129000 Eya1 673.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 14129000 14130000 Eya1 673.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 14130000 14131000 Eya1 673.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 14131000 14132000 Eya1 673.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 14132000 14133000 Eya1 673.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 14133000 14134000 Eya1 673.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 14134000 14135000 Eya1 673.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 14135000 14136000 Eya1 673.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 14136000 14137000 Eya1 673.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 14137000 14138000 Eya1 673.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 14138000 14139000 Eya1 673.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 14139000 14140000 Eya1 673.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 14140000 14141000 Eya1 673.0 -160000 0.000891530461 0.849999946243 4.242405017910 0.600000000000 +chr1 14141000 14142000 Eya1 673.0 -159000 0.000891530461 0.869107683649 4.789812097144 0.600000000000 +chr1 14142000 14143000 Eya1 673.0 -158000 0.000891530461 0.851329217290 4.303889149198 0.600000000000 +chr1 14143000 14144000 Eya1 673.0 -157000 0.000891530461 0.855727455775 4.367181637306 0.600000000000 +chr1 14144000 14145000 Eya1 673.0 -156000 0.000891530461 0.873934387705 5.120143967809 0.600000000000 +chr1 14145000 14146000 Eya1 673.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 14146000 14147000 Eya1 673.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 14147000 14148000 Eya1 673.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 14148000 14149000 Eya1 673.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 14149000 14150000 Eya1 673.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 14150000 14151000 Eya1 673.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 14151000 14152000 Eya1 673.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 14152000 14153000 Eya1 673.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 14153000 14154000 Eya1 673.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 14154000 14155000 Eya1 673.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 14155000 14156000 Eya1 673.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 14156000 14157000 Eya1 673.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 14157000 14158000 Eya1 673.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 14158000 14159000 Eya1 673.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 14159000 14160000 Eya1 673.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 14160000 14161000 Eya1 673.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 14161000 14162000 Eya1 673.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 14162000 14163000 Eya1 673.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 14163000 14164000 Eya1 673.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 14164000 14165000 Eya1 673.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 14165000 14166000 Eya1 673.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 14166000 14167000 Eya1 673.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 14167000 14168000 Eya1 673.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 14168000 14169000 Eya1 673.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 14169000 14170000 Eya1 673.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 14170000 14171000 Eya1 673.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 14171000 14172000 Eya1 673.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 14172000 14173000 Eya1 673.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 14173000 14174000 Eya1 673.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 14174000 14175000 Eya1 673.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 14175000 14176000 Eya1 673.0 -125000 0.000297176820 0.789042220648 0.916568982282 0.200000000000 +chr1 14176000 14177000 Eya1 673.0 -124000 0.000297176820 0.798137256530 0.908160092485 0.200000000000 +chr1 14177000 14178000 Eya1 673.0 -123000 0.000297176820 0.785510253584 0.798302018335 0.200000000000 +chr1 14178000 14179000 Eya1 673.0 -122000 0.000297176820 0.799644194656 0.925135047590 0.200000000000 +chr1 14179000 14180000 Eya1 673.0 -121000 0.000297176820 0.790961581141 0.883834378206 0.200000000000 +chr1 14180000 14181000 Eya1 673.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 14181000 14182000 Eya1 673.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 14182000 14183000 Eya1 673.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 14183000 14184000 Eya1 673.0 -117000 0.000297176820 0.774846873828 0.860777829009 0.200000000000 +chr1 14184000 14185000 Eya1 673.0 -116000 0.000297176820 0.765795808398 0.791915602137 0.200000000000 +chr1 14185000 14186000 Eya1 673.0 -115000 0.000297176820 0.757379810911 0.761457309513 0.200000000000 +chr1 14186000 14187000 Eya1 673.0 -114000 0.000297176820 0.773895809279 0.811388936776 0.200000000000 +chr1 14187000 14188000 Eya1 673.0 -113000 0.000297176820 0.780251801078 0.891796850153 0.200000000000 +chr1 14188000 14189000 Eya1 673.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 14189000 14190000 Eya1 673.0 -111000 0.000297176820 0.805959066383 1.064402690160 0.200000000000 +chr1 14190000 14191000 Eya1 673.0 -110000 0.000297176820 0.826154588365 1.207188418049 0.200000000000 +chr1 14191000 14192000 Eya1 673.0 -109000 0.000297176820 0.796608508060 1.010096430089 0.200000000000 +chr1 14192000 14193000 Eya1 673.0 -108000 0.000297176820 0.785369993572 0.951821635672 0.200000000000 +chr1 14193000 14194000 Eya1 673.0 -107000 0.000297176820 0.763585636187 0.824912085835 0.200000000000 +chr1 14194000 14195000 Eya1 673.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 14195000 14196000 Eya1 673.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 14196000 14197000 Eya1 673.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 14197000 14198000 Eya1 673.0 -103000 0.001188707281 0.843960603767 5.424079472832 0.800000000000 +chr1 14198000 14199000 Eya1 673.0 -102000 0.001188707281 1.000000000000 5.499413910652 0.800000000000 +chr1 14199000 14200000 Eya1 673.0 -101000 0.001188707281 0.853858772997 5.822908849742 0.800000000000 +chr1 14200000 14201000 Eya1 673.0 -100000 0.001188707281 0.828442819541 4.888367915554 0.800000000000 +chr1 14201000 14202000 Eya1 673.0 -99000 0.001188707281 0.815159530773 4.499520464782 0.800000000000 +chr1 14202000 14203000 Eya1 673.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 14203000 14204000 Eya1 673.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 14204000 14205000 Eya1 673.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 14205000 14206000 Eya1 673.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 14206000 14207000 Eya1 673.0 -94000 0.000594353640 0.745179566394 1.546710160135 0.400000000000 +chr1 14207000 14208000 Eya1 673.0 -93000 0.000594353640 0.740519396446 1.488563161197 0.400000000000 +chr1 14208000 14209000 Eya1 673.0 -92000 0.000594353640 0.723302632894 1.093806079608 0.400000000000 +chr1 14209000 14210000 Eya1 673.0 -91000 0.000594353640 0.723801019412 1.031140105862 0.400000000000 +chr1 14210000 14211000 Eya1 673.0 -90000 0.000594353640 0.727642253997 1.020509795419 0.400000000000 +chr1 14211000 14212000 Eya1 673.0 -89000 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14457000 Eya1 673.0 156000 0.000594353640 0.613314445827 0.876012833675 0.400000000000 +chr1 14457000 14458000 Eya1 673.0 157000 0.000594353640 0.602751520183 0.821489212945 0.400000000000 +chr1 14458000 14459000 Eya1 673.0 158000 0.001188707281 0.585293824856 1.583831204275 0.800000000000 +chr1 14459000 14460000 Eya1 673.0 159000 0.000594353640 0.573814787091 0.770345916308 0.400000000000 +chr1 14460000 14461000 Eya1 673.0 160000 0.001188707281 0.559100492248 1.517079697070 0.800000000000 +chr1 14461000 14462000 Eya1 673.0 161000 0.001188707281 0.533506885425 1.429450544260 0.800000000000 +chr1 14462000 14463000 Eya1 673.0 162000 0.001188707281 0.591476571829 1.616154290340 0.800000000000 +chr1 14463000 14464000 Eya1 673.0 163000 0.000594353640 0.593731273297 0.821489212945 0.400000000000 +chr1 14464000 14465000 Eya1 673.0 164000 0.000594353640 0.604924746422 0.857051516792 0.400000000000 +chr1 14465000 14466000 Eya1 673.0 165000 0.000000000000 0.620870359018 0.000000000000 0.000000000000 +chr1 14466000 14467000 Eya1 673.0 166000 0.000000000000 0.653063136379 0.000000000000 0.000000000000 +chr1 14467000 14468000 Eya1 673.0 167000 0.000000000000 0.616215444951 0.000000000000 0.000000000000 +chr1 14468000 14469000 Eya1 673.0 168000 0.000000000000 0.616137376589 0.000000000000 0.000000000000 +chr1 14469000 14470000 Eya1 673.0 169000 0.000000000000 0.600847921629 0.000000000000 0.000000000000 +chr1 14470000 14471000 Eya1 673.0 170000 0.000000000000 0.585658029501 0.000000000000 0.000000000000 +chr1 14471000 14472000 Eya1 673.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000 +chr1 14472000 14473000 Eya1 673.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000 +chr1 14473000 14474000 Eya1 673.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000 +chr1 14474000 14475000 Eya1 673.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000 +chr1 14475000 14476000 Eya1 673.0 175000 0.000000000000 0.586742846341 0.000000000000 0.000000000000 +chr1 14476000 14477000 Eya1 673.0 176000 0.000297176820 0.580281241496 0.421231702882 0.200000000000 +chr1 14477000 14478000 Eya1 673.0 177000 0.000297176820 0.600664600573 0.449952046478 0.200000000000 +chr1 14478000 14479000 Eya1 673.0 178000 0.000594353640 0.611923543314 0.933862738240 0.400000000000 +chr1 14479000 14480000 Eya1 673.0 179000 0.000594353640 0.616982108456 0.951821637197 0.400000000000 +chr1 14480000 14481000 Eya1 673.0 180000 0.001485884101 0.367009687936 2.512422592521 1.000000000000 +chr1 14481000 14482000 Eya1 673.0 181000 0.001188707281 0.637219432588 2.020192860178 0.800000000000 +chr1 14482000 14483000 Eya1 673.0 182000 0.001188707281 0.649572741436 2.128805380321 0.800000000000 +chr1 14483000 14484000 Eya1 673.0 183000 0.001783060921 0.359231506903 3.093420317586 1.200000000000 +chr1 14484000 14485000 Eya1 673.0 184000 0.002080237741 0.375416393977 3.380127570538 1.400000000000 +chr1 14485000 14486000 Eya1 673.0 185000 0.001188707281 0.617559413959 1.903643274393 0.800000000000 +chr1 14486000 14487000 Eya1 673.0 186000 0.001188707281 0.647906480781 2.106158514412 0.800000000000 +chr1 14487000 14488000 Eya1 673.0 187000 0.001188707281 0.651241359569 2.140312436513 0.800000000000 +chr1 14488000 14489000 Eya1 673.0 188000 0.000594353640 0.647869186187 1.058710697124 0.400000000000 +chr1 14489000 14490000 Eya1 673.0 189000 0.000297176820 0.671654971880 0.575520059550 0.200000000000 +chr1 14490000 14491000 Eya1 673.0 190000 0.000297176820 0.671941112135 0.578885673960 0.200000000000 +chr1 14491000 14492000 Eya1 673.0 191000 0.002080237741 0.341250160004 3.849589730333 1.400000000000 +chr1 14492000 14493000 Eya1 673.0 192000 0.003268945022 0.068166431915 5.982878858272 2.200000000000 +chr1 14493000 14494000 Eya1 673.0 193000 0.002971768202 0.059322876246 5.892229182196 2.000000000000 +chr1 14494000 14495000 Eya1 673.0 194000 0.003268945022 0.062511655285 6.294126893758 2.200000000000 +chr1 14495000 14496000 Eya1 673.0 195000 0.003268945022 0.056441264815 6.680269651133 2.200000000000 +chr1 14496000 14497000 Eya1 673.0 196000 0.002971768202 0.056496760292 6.072972410121 2.000000000000 +chr1 14497000 14498000 Eya1 673.0 197000 0.002080237741 0.335210836347 3.937080406684 1.400000000000 +chr1 14498000 14499000 Eya1 673.0 198000 0.002971768202 0.083110512066 4.852424033528 2.000000000000 +chr1 14499000 14500000 Eya1 673.0 199000 0.003343239227 0.073447408129 5.830530441735 2.250000000000 +chr1 14500000 14501000 Eya1 673.0 200000 0.004457652303 1.000000000000 7.575723225668 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 472.0 -200000 0.001412429379 0.880044890460 8.554173074049 0.666666666667 +chr1 18894000 18895000 Tfap2d 472.0 -199000 0.001059322034 0.852151439574 5.040852007510 0.500000000000 +chr1 18895000 18896000 Tfap2d 472.0 -198000 0.000847457627 0.820756603944 3.282415254892 0.400000000000 +chr1 18896000 18897000 Tfap2d 472.0 -197000 0.000847457627 0.814190727178 3.136530131373 0.400000000000 +chr1 18897000 18898000 Tfap2d 472.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 472.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 472.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 472.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 472.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 472.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 472.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 472.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 472.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 472.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 472.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 18908000 18909000 Tfap2d 472.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 18909000 18910000 Tfap2d 472.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 18910000 18911000 Tfap2d 472.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 18911000 18912000 Tfap2d 472.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 18912000 18913000 Tfap2d 472.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18913000 18914000 Tfap2d 472.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 18914000 18915000 Tfap2d 472.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 18915000 18916000 Tfap2d 472.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 18916000 18917000 Tfap2d 472.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 18917000 18918000 Tfap2d 472.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 18918000 18919000 Tfap2d 472.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 18919000 18920000 Tfap2d 472.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 18920000 18921000 Tfap2d 472.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 18921000 18922000 Tfap2d 472.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 18922000 18923000 Tfap2d 472.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 18923000 18924000 Tfap2d 472.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 18924000 18925000 Tfap2d 472.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 18925000 18926000 Tfap2d 472.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 18926000 18927000 Tfap2d 472.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 18927000 18928000 Tfap2d 472.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 18928000 18929000 Tfap2d 472.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 18929000 18930000 Tfap2d 472.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 18930000 18931000 Tfap2d 472.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 18931000 18932000 Tfap2d 472.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 18932000 18933000 Tfap2d 472.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 18933000 18934000 Tfap2d 472.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 18934000 18935000 Tfap2d 472.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 18935000 18936000 Tfap2d 472.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 18936000 18937000 Tfap2d 472.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 18937000 18938000 Tfap2d 472.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 18938000 18939000 Tfap2d 472.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 18939000 18940000 Tfap2d 472.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 18940000 18941000 Tfap2d 472.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 18941000 18942000 Tfap2d 472.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 18942000 18943000 Tfap2d 472.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 18943000 18944000 Tfap2d 472.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 18944000 18945000 Tfap2d 472.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 18945000 18946000 Tfap2d 472.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 18946000 18947000 Tfap2d 472.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 18947000 18948000 Tfap2d 472.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 18948000 18949000 Tfap2d 472.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 18949000 18950000 Tfap2d 472.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 18950000 18951000 Tfap2d 472.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 18951000 18952000 Tfap2d 472.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 18952000 18953000 Tfap2d 472.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 18953000 18954000 Tfap2d 472.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 18954000 18955000 Tfap2d 472.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 18955000 18956000 Tfap2d 472.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 18956000 18957000 Tfap2d 472.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 18957000 18958000 Tfap2d 472.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 18958000 18959000 Tfap2d 472.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 18959000 18960000 Tfap2d 472.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 18960000 18961000 Tfap2d 472.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 18961000 18962000 Tfap2d 472.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 18962000 18963000 Tfap2d 472.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 18963000 18964000 Tfap2d 472.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 18964000 18965000 Tfap2d 472.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 18965000 18966000 Tfap2d 472.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 18966000 18967000 Tfap2d 472.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 18967000 18968000 Tfap2d 472.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 18968000 18969000 Tfap2d 472.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 18969000 18970000 Tfap2d 472.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 18970000 18971000 Tfap2d 472.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 18971000 18972000 Tfap2d 472.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 18972000 18973000 Tfap2d 472.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 18973000 18974000 Tfap2d 472.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 18974000 18975000 Tfap2d 472.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 18975000 18976000 Tfap2d 472.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 18976000 18977000 Tfap2d 472.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 18977000 18978000 Tfap2d 472.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 18978000 18979000 Tfap2d 472.0 -115000 0.001271186441 0.757379810911 3.257165906583 0.600000000000 +chr1 18979000 18980000 Tfap2d 472.0 -114000 0.001271186441 0.773895809279 3.470750557945 0.600000000000 +chr1 18980000 18981000 Tfap2d 472.0 -113000 0.001271186441 0.780251801078 3.814698814531 0.600000000000 +chr1 18981000 18982000 Tfap2d 472.0 -112000 0.001271186441 0.809192563048 4.602517039860 0.600000000000 +chr1 18982000 18983000 Tfap2d 472.0 -111000 0.001271186441 0.805959066383 4.553027608970 0.600000000000 +chr1 18983000 18984000 Tfap2d 472.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 18984000 18985000 Tfap2d 472.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 18985000 18986000 Tfap2d 472.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 18986000 18987000 Tfap2d 472.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000 +chr1 18987000 18988000 Tfap2d 472.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 18988000 18989000 Tfap2d 472.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 18989000 18990000 Tfap2d 472.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 18990000 18991000 Tfap2d 472.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000 +chr1 18991000 18992000 Tfap2d 472.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18992000 18993000 Tfap2d 472.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 18993000 18994000 Tfap2d 472.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000 +chr1 18994000 18995000 Tfap2d 472.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000 +chr1 18995000 18996000 Tfap2d 472.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 18996000 18997000 Tfap2d 472.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 18997000 18998000 Tfap2d 472.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 18998000 18999000 Tfap2d 472.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 18999000 19000000 Tfap2d 472.0 -94000 0.000423728814 0.745179566394 1.102686374757 0.200000000000 +chr1 19000000 19001000 Tfap2d 472.0 -93000 0.000423728814 0.740519396446 1.061231999455 0.200000000000 +chr1 19001000 19002000 Tfap2d 472.0 -92000 0.000423728814 0.723302632894 0.779800308873 0.200000000000 +chr1 19002000 19003000 Tfap2d 472.0 -91000 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0.364712806099 0.200000000000 +chr1 19176000 19177000 Tfap2d 472.0 83000 0.000423728814 0.455460847598 0.319329990793 0.200000000000 +chr1 19177000 19178000 Tfap2d 472.0 84000 0.000423728814 0.431883914707 0.300306076526 0.200000000000 +chr1 19178000 19179000 Tfap2d 472.0 85000 0.000423728814 0.408620507080 0.299668484002 0.200000000000 +chr1 19179000 19180000 Tfap2d 472.0 86000 0.000423728814 0.421643738980 0.329006657256 0.200000000000 +chr1 19180000 19181000 Tfap2d 472.0 87000 0.000847457627 0.383191453565 0.627306026275 0.400000000000 +chr1 19181000 19182000 Tfap2d 472.0 88000 0.000847457627 0.391467791454 0.623151681699 0.400000000000 +chr1 19182000 19183000 Tfap2d 472.0 89000 0.000847457627 0.402358700756 0.688506614142 0.400000000000 +chr1 19183000 19184000 Tfap2d 472.0 90000 0.000847457627 0.422972373487 0.693581601507 0.400000000000 +chr1 19184000 19185000 Tfap2d 472.0 91000 0.000423728814 0.415388228662 0.332886452773 0.200000000000 +chr1 19185000 19186000 Tfap2d 472.0 92000 0.000000000000 0.457521466073 0.000000000000 0.000000000000 +chr1 19186000 19187000 Tfap2d 472.0 93000 0.000423728814 0.481878108523 0.387757845880 0.200000000000 +chr1 19187000 19188000 Tfap2d 472.0 94000 0.001271186441 0.485654072445 1.066578256419 0.600000000000 +chr1 19188000 19189000 Tfap2d 472.0 95000 0.001694915254 0.470520014646 1.363708752551 0.800000000000 +chr1 19189000 19190000 Tfap2d 472.0 96000 0.001694915254 0.451356425790 1.325294422259 0.800000000000 +chr1 19190000 19191000 Tfap2d 472.0 97000 0.001694915254 0.458000704387 1.373662831110 0.800000000000 +chr1 19191000 19192000 Tfap2d 472.0 98000 0.001271186441 0.454705613751 1.005775695846 0.600000000000 +chr1 19192000 19193000 Tfap2d 472.0 99000 0.001271186441 0.466062200428 1.080182571018 0.600000000000 +chr1 19193000 19194000 Tfap2d 472.0 100000 0.000847457627 0.485559847885 0.804238495376 0.400000000000 +chr1 19194000 19195000 Tfap2d 472.0 101000 0.000847457627 0.476647654186 0.860633267502 0.400000000000 +chr1 19195000 19196000 Tfap2d 472.0 102000 0.000847457627 0.458905220217 0.837648996932 0.400000000000 +chr1 19196000 19197000 Tfap2d 472.0 103000 0.000847457627 0.494251471435 0.925533481613 0.400000000000 +chr1 19197000 19198000 Tfap2d 472.0 104000 0.001694915254 0.496762683299 1.764298198693 0.800000000000 +chr1 19198000 19199000 Tfap2d 472.0 105000 0.002118644068 0.509055896344 2.112931975945 1.000000000000 +chr1 19199000 19200000 Tfap2d 472.0 106000 0.002118644068 0.494608472741 2.063506666181 1.000000000000 +chr1 19200000 19201000 Tfap2d 472.0 107000 0.002118644068 0.499149741114 1.982357527016 1.000000000000 +chr1 19201000 19202000 Tfap2d 472.0 108000 0.002542372881 0.503477555567 2.320172973657 1.200000000000 +chr1 19202000 19203000 Tfap2d 472.0 109000 0.001271186441 0.499669178563 1.202930590359 0.600000000000 +chr1 19203000 19204000 Tfap2d 472.0 110000 0.000847457627 0.503445250814 0.830257976313 0.400000000000 +chr1 19204000 19205000 Tfap2d 472.0 111000 0.001271186441 0.472832134979 1.179475119064 0.600000000000 +chr1 19205000 19206000 Tfap2d 472.0 112000 0.001694915254 0.479967223270 1.613072639333 0.800000000000 +chr1 19206000 19207000 Tfap2d 472.0 113000 0.001271186441 0.490923249210 1.241734803255 0.600000000000 +chr1 19207000 19208000 Tfap2d 472.0 114000 0.000847457627 0.453380733495 0.815860439041 0.400000000000 +chr1 19208000 19209000 Tfap2d 472.0 115000 0.000847457627 0.469666167625 0.822996244685 0.400000000000 +chr1 19209000 19210000 Tfap2d 472.0 116000 0.000423728814 0.505935664500 0.473637100575 0.200000000000 +chr1 19210000 19211000 Tfap2d 472.0 117000 0.000000000000 0.523376482067 0.000000000000 0.000000000000 +chr1 19211000 19212000 Tfap2d 472.0 118000 0.000000000000 0.529451256365 0.000000000000 0.000000000000 +chr1 19212000 19213000 Tfap2d 472.0 119000 0.000000000000 0.533356831096 0.000000000000 0.000000000000 +chr1 19213000 19214000 Tfap2d 472.0 120000 0.000000000000 0.516584121708 0.000000000000 0.000000000000 +chr1 19214000 19215000 Tfap2d 472.0 121000 0.000000000000 0.535771528777 0.000000000000 0.000000000000 +chr1 19215000 19216000 Tfap2d 472.0 122000 0.000847457627 0.530490537983 0.953674702560 0.400000000000 +chr1 19216000 19217000 Tfap2d 472.0 123000 0.000847457627 0.530562527645 0.973405903461 0.400000000000 +chr1 19217000 19218000 Tfap2d 472.0 124000 0.000847457627 0.545553903451 1.034020922346 0.400000000000 +chr1 19218000 19219000 Tfap2d 472.0 125000 0.000847457627 0.564891705893 1.129150847963 0.400000000000 +chr1 19219000 19220000 Tfap2d 472.0 126000 0.001271186441 0.540351446443 1.579968536413 0.600000000000 +chr1 19220000 19221000 Tfap2d 472.0 127000 0.000847457627 0.544910167356 1.077434014837 0.400000000000 +chr1 19221000 19222000 Tfap2d 472.0 128000 0.000847457627 0.559785966334 1.129150847963 0.400000000000 +chr1 19222000 19223000 Tfap2d 472.0 129000 0.000847457627 0.550703059901 1.089913945607 0.400000000000 +chr1 19223000 19224000 Tfap2d 472.0 130000 0.000847457627 0.549227272107 1.019089212169 0.400000000000 +chr1 19224000 19225000 Tfap2d 472.0 131000 0.000423728814 0.561819843709 0.553505317542 0.200000000000 +chr1 19225000 19226000 Tfap2d 472.0 132000 0.000423728814 0.585853557394 0.566842795180 0.200000000000 +chr1 19226000 19227000 Tfap2d 472.0 133000 0.000423728814 0.595436468036 0.511390782207 0.200000000000 +chr1 19227000 19228000 Tfap2d 472.0 134000 0.001271186441 0.603093891321 1.597854972809 0.600000000000 +chr1 19228000 19229000 Tfap2d 472.0 135000 0.001694915254 0.604088556070 2.231523414735 0.800000000000 +chr1 19229000 19230000 Tfap2d 472.0 136000 0.002118644068 0.411260634766 2.556953911034 1.000000000000 +chr1 19230000 19231000 Tfap2d 472.0 137000 0.002542372881 0.432301751883 2.861024107679 1.200000000000 +chr1 19231000 19232000 Tfap2d 472.0 138000 0.002542372881 0.454889032857 3.183695998364 1.200000000000 +chr1 19232000 19233000 Tfap2d 472.0 139000 0.001694915254 0.585442994010 1.987941631835 0.800000000000 +chr1 19233000 19234000 Tfap2d 472.0 140000 0.001271186441 0.584686184662 1.339973315587 0.600000000000 +chr1 19234000 19235000 Tfap2d 472.0 141000 0.000847457627 0.604143773708 0.963439290036 0.400000000000 +chr1 19235000 19236000 Tfap2d 472.0 142000 0.000423728814 0.632888736121 0.538717007419 0.200000000000 +chr1 19236000 19237000 Tfap2d 472.0 143000 0.001271186441 0.631972051038 1.539751155194 0.600000000000 +chr1 19237000 19238000 Tfap2d 472.0 144000 0.001271186441 0.630242651353 1.749717221137 0.600000000000 +chr1 19238000 19239000 Tfap2d 472.0 145000 0.001271186441 0.654163481416 2.117157840635 0.600000000000 +chr1 19239000 19240000 Tfap2d 472.0 146000 0.001694915254 0.637809455886 2.601730063600 0.800000000000 +chr1 19240000 19241000 Tfap2d 472.0 147000 0.001271186441 0.621469775934 1.857155998658 0.600000000000 +chr1 19241000 19242000 Tfap2d 472.0 148000 0.000423728814 0.608829914540 0.641562981525 0.200000000000 +chr1 19242000 19243000 Tfap2d 472.0 149000 0.000423728814 0.611099504790 0.659550728811 0.200000000000 +chr1 19243000 19244000 Tfap2d 472.0 150000 0.000847457627 0.594707930687 1.227337877296 0.400000000000 +chr1 19244000 19245000 Tfap2d 472.0 151000 0.001271186441 0.605065312757 1.942346641449 0.600000000000 +chr1 19245000 19246000 Tfap2d 472.0 152000 0.001271186441 0.593714719997 1.881918078824 0.600000000000 +chr1 19246000 19247000 Tfap2d 472.0 153000 0.002118644068 0.403579514801 3.164660446662 1.000000000000 +chr1 19247000 19248000 Tfap2d 472.0 154000 0.002118644068 0.393839975386 3.222462464392 1.000000000000 +chr1 19248000 19249000 Tfap2d 472.0 155000 0.001694915254 0.609612095406 2.498121343489 0.800000000000 +chr1 19249000 19250000 Tfap2d 472.0 156000 0.000847457627 0.613314445827 1.249060671745 0.400000000000 +chr1 19250000 19251000 Tfap2d 472.0 157000 0.000847457627 0.602751520183 1.171318305746 0.400000000000 +chr1 19251000 19252000 Tfap2d 472.0 158000 0.000000000000 0.585293824856 0.000000000000 0.000000000000 +chr1 19252000 19253000 Tfap2d 472.0 159000 0.000847457627 0.573814787091 1.098395766262 0.400000000000 +chr1 19253000 19254000 Tfap2d 472.0 160000 0.000847457627 0.559100492248 1.081562114542 0.400000000000 +chr1 19254000 19255000 Tfap2d 472.0 161000 0.001694915254 0.533506885425 2.038178424337 0.800000000000 +chr1 19255000 19256000 Tfap2d 472.0 162000 0.001694915254 0.591476571829 2.304389486014 0.800000000000 +chr1 19256000 19257000 Tfap2d 472.0 163000 0.002542372881 0.406268726703 3.513954917238 1.200000000000 +chr1 19257000 19258000 Tfap2d 472.0 164000 0.002118644068 0.395075253578 3.055061815685 1.000000000000 +chr1 19258000 19259000 Tfap2d 472.0 165000 0.002118644068 0.379129640982 3.252162579500 1.000000000000 +chr1 19259000 19260000 Tfap2d 472.0 166000 0.001694915254 0.653063136379 2.822877120847 0.800000000000 +chr1 19260000 19261000 Tfap2d 472.0 167000 0.001694915254 0.616215444951 2.701317818024 0.800000000000 +chr1 19261000 19262000 Tfap2d 472.0 168000 0.000847457627 0.616137376589 1.312966101957 0.400000000000 +chr1 19262000 19263000 Tfap2d 472.0 169000 0.000423728814 0.600847921629 0.593041411154 0.200000000000 +chr1 19263000 19264000 Tfap2d 472.0 170000 0.000423728814 0.585658029501 0.573755512251 0.200000000000 +chr1 19264000 19265000 Tfap2d 472.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000 +chr1 19265000 19266000 Tfap2d 472.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000 +chr1 19266000 19267000 Tfap2d 472.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000 +chr1 19267000 19268000 Tfap2d 472.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000 +chr1 19268000 19269000 Tfap2d 472.0 175000 0.000423728814 0.586742846341 0.608378689139 0.200000000000 +chr1 19269000 19270000 Tfap2d 472.0 176000 0.000423728814 0.580281241496 0.600612152627 0.200000000000 +chr1 19270000 19271000 Tfap2d 472.0 177000 0.000423728814 0.600664600573 0.641562981525 0.200000000000 +chr1 19271000 19272000 Tfap2d 472.0 178000 0.000423728814 0.611923543314 0.665772905546 0.200000000000 +chr1 19272000 19273000 Tfap2d 472.0 179000 0.000423728814 0.616982108456 0.678576230756 0.200000000000 +chr1 19273000 19274000 Tfap2d 472.0 180000 0.000000000000 0.632990312064 0.000000000000 0.000000000000 +chr1 19274000 19275000 Tfap2d 472.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000 +chr1 19275000 19276000 Tfap2d 472.0 182000 0.000423728814 0.649572741436 0.758837934828 0.200000000000 +chr1 19276000 19277000 Tfap2d 472.0 183000 0.000423728814 0.640768493097 0.735124249200 0.200000000000 +chr1 19277000 19278000 Tfap2d 472.0 184000 0.000423728814 0.624583606023 0.688506614701 0.200000000000 +chr1 19278000 19279000 Tfap2d 472.0 185000 0.000423728814 0.617559413959 0.678576230756 0.200000000000 +chr1 19279000 19280000 Tfap2d 472.0 186000 0.000423728814 0.647906480781 0.750765190784 0.200000000000 +chr1 19280000 19281000 Tfap2d 472.0 187000 0.000000000000 0.651241359569 0.000000000000 0.000000000000 +chr1 19281000 19282000 Tfap2d 472.0 188000 0.000000000000 0.647869186187 0.000000000000 0.000000000000 +chr1 19282000 19283000 Tfap2d 472.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 472.0 190000 0.000000000000 0.671941112135 0.000000000000 0.000000000000 +chr1 19284000 19285000 Tfap2d 472.0 191000 0.000000000000 0.658749839996 0.000000000000 0.000000000000 +chr1 19285000 19286000 Tfap2d 472.0 192000 0.000000000000 0.655383997647 0.000000000000 0.000000000000 +chr1 19286000 19287000 Tfap2d 472.0 193000 0.000000000000 0.676994533785 0.000000000000 0.000000000000 +chr1 19287000 19288000 Tfap2d 472.0 194000 0.000000000000 0.669325066593 0.000000000000 0.000000000000 +chr1 19288000 19289000 Tfap2d 472.0 195000 0.000000000000 0.685162890895 0.000000000000 0.000000000000 +chr1 19289000 19290000 Tfap2d 472.0 196000 0.000000000000 0.685254654751 0.000000000000 0.000000000000 +chr1 19290000 19291000 Tfap2d 472.0 197000 0.000000000000 0.664789163653 0.000000000000 0.000000000000 +chr1 19291000 19292000 Tfap2d 472.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 472.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 472.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 810.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 810.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 810.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 810.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 810.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 810.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 810.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 810.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 810.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 810.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 810.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 810.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 810.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 810.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 810.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 4302000 4303000 Sox17 810.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 4303000 4304000 Sox17 810.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 4304000 4305000 Sox17 810.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 4305000 4306000 Sox17 810.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 4306000 4307000 Sox17 810.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4307000 4308000 Sox17 810.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 4308000 4309000 Sox17 810.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 4309000 4310000 Sox17 810.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 4310000 4311000 Sox17 810.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 4311000 4312000 Sox17 810.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 4312000 4313000 Sox17 810.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 4313000 4314000 Sox17 810.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 4314000 4315000 Sox17 810.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 4315000 4316000 Sox17 810.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 4316000 4317000 Sox17 810.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 4317000 4318000 Sox17 810.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 4318000 4319000 Sox17 810.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 4319000 4320000 Sox17 810.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 4320000 4321000 Sox17 810.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 4321000 4322000 Sox17 810.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 4322000 4323000 Sox17 810.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 4323000 4324000 Sox17 810.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 4324000 4325000 Sox17 810.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 4325000 4326000 Sox17 810.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 4326000 4327000 Sox17 810.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 4327000 4328000 Sox17 810.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 4328000 4329000 Sox17 810.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 4329000 4330000 Sox17 810.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 4330000 4331000 Sox17 810.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 4331000 4332000 Sox17 810.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 4332000 4333000 Sox17 810.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 4333000 4334000 Sox17 810.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 4334000 4335000 Sox17 810.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 4335000 4336000 Sox17 810.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 4336000 4337000 Sox17 810.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 4337000 4338000 Sox17 810.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 4338000 4339000 Sox17 810.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 4339000 4340000 Sox17 810.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 4340000 4341000 Sox17 810.0 -147000 0.000000000000 0.855607168087 0.000000000000 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 832.0 -200000 0.000400641026 0.880044890460 2.426424093120 0.333333333333 +chr1 14101000 14102000 Eya1 832.0 -199000 0.000300480769 0.852151439574 1.429857059822 0.250000000000 +chr1 14102000 14103000 Eya1 832.0 -198000 0.000240384615 0.820756603944 0.931069711724 0.200000000000 +chr1 14103000 14104000 Eya1 832.0 -197000 0.000240384615 0.814190727178 0.889688835341 0.200000000000 +chr1 14104000 14105000 Eya1 832.0 -196000 0.000240384615 0.827190062074 0.976487746811 0.200000000000 +chr1 14105000 14106000 Eya1 832.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 14106000 14107000 Eya1 832.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 14107000 14108000 Eya1 832.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 14108000 14109000 Eya1 832.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 14109000 14110000 Eya1 832.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 14110000 14111000 Eya1 832.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 14111000 14112000 Eya1 832.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 14112000 14113000 Eya1 832.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 14113000 14114000 Eya1 832.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 14114000 14115000 Eya1 832.0 -186000 0.000000000000 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185000 0.000961538462 0.617559413959 1.539846062099 0.800000000000 +chr1 14486000 14487000 Eya1 832.0 186000 0.000961538462 0.647906480781 1.703659471393 0.800000000000 +chr1 14487000 14488000 Eya1 832.0 187000 0.000961538462 0.651241359569 1.731286381939 0.800000000000 +chr1 14488000 14489000 Eya1 832.0 188000 0.001201923077 0.352130813813 2.140962437394 1.000000000000 +chr1 14489000 14490000 Eya1 832.0 189000 0.001442307692 0.328345028120 2.793209135173 1.200000000000 +chr1 14490000 14491000 Eya1 832.0 190000 0.000721153846 0.671941112135 1.404771845823 0.600000000000 +chr1 14491000 14492000 Eya1 832.0 191000 0.001442307692 0.341250160004 2.669066506024 1.200000000000 +chr1 14492000 14493000 Eya1 832.0 192000 0.002403846154 0.068166431915 4.399560174407 2.000000000000 +chr1 14493000 14494000 Eya1 832.0 193000 0.002163461538 0.323005466215 4.289571172663 1.800000000000 +chr1 14494000 14495000 Eya1 832.0 194000 0.001682692308 0.330674933407 3.239907320421 1.400000000000 +chr1 14495000 14496000 Eya1 832.0 195000 0.002163461538 0.314837109105 4.421153111551 1.800000000000 +chr1 14496000 14497000 Eya1 832.0 196000 0.001682692308 0.314745345249 3.438674642317 1.400000000000 +chr1 14497000 14498000 Eya1 832.0 197000 0.001442307692 0.335210836347 2.729727108893 1.200000000000 +chr1 14498000 14499000 Eya1 832.0 198000 0.002644230769 0.083110512066 4.317607586564 2.200000000000 +chr1 14499000 14500000 Eya1 832.0 199000 0.003305288462 0.073447408129 5.764345200343 2.750000000000 +chr1 14500000 14501000 Eya1 832.0 200000 0.003605769231 1.000000000000 6.127958811148 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 800.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 18894000 18895000 Tfap2d 800.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 18895000 18896000 Tfap2d 800.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 18896000 18897000 Tfap2d 800.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 18897000 18898000 Tfap2d 800.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 800.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 800.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 800.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 800.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 800.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 800.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 800.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 800.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 800.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 800.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 18908000 18909000 Tfap2d 800.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 18909000 18910000 Tfap2d 800.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 18910000 18911000 Tfap2d 800.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 18911000 18912000 Tfap2d 800.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 18912000 18913000 Tfap2d 800.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18913000 18914000 Tfap2d 800.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 18914000 18915000 Tfap2d 800.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 18915000 18916000 Tfap2d 800.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 18916000 18917000 Tfap2d 800.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 18917000 18918000 Tfap2d 800.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 18918000 18919000 Tfap2d 800.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 18919000 18920000 Tfap2d 800.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 18920000 18921000 Tfap2d 800.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 18921000 18922000 Tfap2d 800.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 18922000 18923000 Tfap2d 800.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 18923000 18924000 Tfap2d 800.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 18924000 18925000 Tfap2d 800.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 18925000 18926000 Tfap2d 800.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 18926000 18927000 Tfap2d 800.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 18927000 18928000 Tfap2d 800.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 18928000 18929000 Tfap2d 800.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 18929000 18930000 Tfap2d 800.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 18930000 18931000 Tfap2d 800.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 18931000 18932000 Tfap2d 800.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 18932000 18933000 Tfap2d 800.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 18933000 18934000 Tfap2d 800.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 18934000 18935000 Tfap2d 800.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 18935000 18936000 Tfap2d 800.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 18936000 18937000 Tfap2d 800.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 18937000 18938000 Tfap2d 800.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 18938000 18939000 Tfap2d 800.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 18939000 18940000 Tfap2d 800.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 18940000 18941000 Tfap2d 800.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 18941000 18942000 Tfap2d 800.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 18942000 18943000 Tfap2d 800.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 18943000 18944000 Tfap2d 800.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 18944000 18945000 Tfap2d 800.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 18945000 18946000 Tfap2d 800.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 18946000 18947000 Tfap2d 800.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 18947000 18948000 Tfap2d 800.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 18948000 18949000 Tfap2d 800.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 18949000 18950000 Tfap2d 800.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 18950000 18951000 Tfap2d 800.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 18951000 18952000 Tfap2d 800.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 18952000 18953000 Tfap2d 800.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 18953000 18954000 Tfap2d 800.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 18954000 18955000 Tfap2d 800.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 18955000 18956000 Tfap2d 800.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 18956000 18957000 Tfap2d 800.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 18957000 18958000 Tfap2d 800.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 18958000 18959000 Tfap2d 800.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 18959000 18960000 Tfap2d 800.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 18960000 18961000 Tfap2d 800.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 18961000 18962000 Tfap2d 800.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 18962000 18963000 Tfap2d 800.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 18963000 18964000 Tfap2d 800.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 18964000 18965000 Tfap2d 800.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 18965000 18966000 Tfap2d 800.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 18966000 18967000 Tfap2d 800.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 18967000 18968000 Tfap2d 800.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 18968000 18969000 Tfap2d 800.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 18969000 18970000 Tfap2d 800.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 18970000 18971000 Tfap2d 800.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 18971000 18972000 Tfap2d 800.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 18972000 18973000 Tfap2d 800.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 18973000 18974000 Tfap2d 800.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 18974000 18975000 Tfap2d 800.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 18975000 18976000 Tfap2d 800.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 18976000 18977000 Tfap2d 800.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 18977000 18978000 Tfap2d 800.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 18978000 18979000 Tfap2d 800.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000 +chr1 18979000 18980000 Tfap2d 800.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000 +chr1 18980000 18981000 Tfap2d 800.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000 +chr1 18981000 18982000 Tfap2d 800.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 18982000 18983000 Tfap2d 800.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000 +chr1 18983000 18984000 Tfap2d 800.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 18984000 18985000 Tfap2d 800.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 18985000 18986000 Tfap2d 800.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 18986000 18987000 Tfap2d 800.0 -107000 0.000500000000 0.763585636187 1.387914584417 0.400000000000 +chr1 18987000 18988000 Tfap2d 800.0 -106000 0.000500000000 0.796206503792 1.682320705695 0.400000000000 +chr1 18988000 18989000 Tfap2d 800.0 -105000 0.000500000000 0.801881199084 1.734893228113 0.400000000000 +chr1 18989000 18990000 Tfap2d 800.0 -104000 0.000500000000 0.830453698245 2.081871876625 0.400000000000 +chr1 18990000 18991000 Tfap2d 800.0 -103000 0.000500000000 0.843960603767 2.281503428260 0.400000000000 +chr1 18991000 18992000 Tfap2d 800.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18992000 18993000 Tfap2d 800.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 18993000 18994000 Tfap2d 800.0 -100000 0.000250000000 0.828442819541 1.028084877240 0.200000000000 +chr1 18994000 18995000 Tfap2d 800.0 -99000 0.000250000000 0.815159530773 0.946305397749 0.200000000000 +chr1 18995000 18996000 Tfap2d 800.0 -98000 0.000250000000 0.803890742201 0.885902925125 0.200000000000 +chr1 18996000 18997000 Tfap2d 800.0 -97000 0.000250000000 0.793812954579 0.832748749263 0.200000000000 +chr1 18997000 18998000 Tfap2d 800.0 -96000 0.000250000000 0.776513211062 0.763989677803 0.200000000000 +chr1 18998000 18999000 Tfap2d 800.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 18999000 19000000 Tfap2d 800.0 -94000 0.000000000000 0.745179566394 0.000000000000 0.000000000000 +chr1 19000000 19001000 Tfap2d 800.0 -93000 0.000000000000 0.740519396446 0.000000000000 0.000000000000 +chr1 19001000 19002000 Tfap2d 800.0 -92000 0.000000000000 0.723302632894 0.000000000000 0.000000000000 +chr1 19002000 19003000 Tfap2d 800.0 -91000 0.000000000000 0.723801019412 0.000000000000 0.000000000000 +chr1 19003000 19004000 Tfap2d 800.0 -90000 0.000000000000 0.727642253997 0.000000000000 0.000000000000 +chr1 19004000 19005000 Tfap2d 800.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000 +chr1 19005000 19006000 Tfap2d 800.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000 +chr1 19006000 19007000 Tfap2d 800.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000 +chr1 19007000 19008000 Tfap2d 800.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000 +chr1 19008000 19009000 Tfap2d 800.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000 +chr1 19009000 19010000 Tfap2d 800.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000 +chr1 19010000 19011000 Tfap2d 800.0 -83000 0.000000000000 0.774521391995 0.000000000000 0.000000000000 +chr1 19011000 19012000 Tfap2d 800.0 -82000 0.000000000000 0.783854637009 0.000000000000 0.000000000000 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19032000 Tfap2d 800.0 -62000 0.000000000000 0.714104264339 0.000000000000 0.000000000000 +chr1 19032000 19033000 Tfap2d 800.0 -61000 0.000000000000 0.719520193233 0.000000000000 0.000000000000 +chr1 19033000 19034000 Tfap2d 800.0 -60000 0.000000000000 0.706118755048 0.000000000000 0.000000000000 +chr1 19034000 19035000 Tfap2d 800.0 -59000 0.000000000000 0.694795175639 0.000000000000 0.000000000000 +chr1 19035000 19036000 Tfap2d 800.0 -58000 0.000000000000 0.677279626754 0.000000000000 0.000000000000 +chr1 19036000 19037000 Tfap2d 800.0 -57000 0.000000000000 0.660669632705 0.000000000000 0.000000000000 +chr1 19037000 19038000 Tfap2d 800.0 -56000 0.000000000000 0.654051782916 0.000000000000 0.000000000000 +chr1 19038000 19039000 Tfap2d 800.0 -55000 0.000000000000 0.645975994037 0.000000000000 0.000000000000 +chr1 19039000 19040000 Tfap2d 800.0 -54000 0.000000000000 0.633180473855 0.000000000000 0.000000000000 +chr1 19040000 19041000 Tfap2d 800.0 -53000 0.000000000000 0.617831075012 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0.000000000000 +chr1 19060000 19061000 Tfap2d 800.0 -33000 0.000000000000 0.603336690823 0.000000000000 0.000000000000 +chr1 19061000 19062000 Tfap2d 800.0 -32000 0.000000000000 0.605799634708 0.000000000000 0.000000000000 +chr1 19062000 19063000 Tfap2d 800.0 -31000 0.000000000000 0.585452191966 0.000000000000 0.000000000000 +chr1 19063000 19064000 Tfap2d 800.0 -30000 0.000000000000 0.594735266795 0.000000000000 0.000000000000 +chr1 19064000 19065000 Tfap2d 800.0 -29000 0.000000000000 0.617102861194 0.000000000000 0.000000000000 +chr1 19065000 19066000 Tfap2d 800.0 -28000 0.000000000000 0.632283362854 0.000000000000 0.000000000000 +chr1 19066000 19067000 Tfap2d 800.0 -27000 0.000000000000 0.629836005199 0.000000000000 0.000000000000 +chr1 19067000 19068000 Tfap2d 800.0 -26000 0.000000000000 0.639196587496 0.000000000000 0.000000000000 +chr1 19068000 19069000 Tfap2d 800.0 -25000 0.000000000000 0.592425075108 0.000000000000 0.000000000000 +chr1 19069000 19070000 Tfap2d 800.0 -24000 0.000000000000 0.564111214304 0.000000000000 0.000000000000 +chr1 19070000 19071000 Tfap2d 800.0 -23000 0.000000000000 0.524123121640 0.000000000000 0.000000000000 +chr1 19071000 19072000 Tfap2d 800.0 -22000 0.000000000000 0.508416731205 0.000000000000 0.000000000000 +chr1 19072000 19073000 Tfap2d 800.0 -21000 0.000000000000 0.504132294917 0.000000000000 0.000000000000 +chr1 19073000 19074000 Tfap2d 800.0 -20000 0.000000000000 0.523809742820 0.000000000000 0.000000000000 +chr1 19074000 19075000 Tfap2d 800.0 -19000 0.000000000000 0.518005863035 0.000000000000 0.000000000000 +chr1 19075000 19076000 Tfap2d 800.0 -18000 0.000000000000 0.521144510602 0.000000000000 0.000000000000 +chr1 19076000 19077000 Tfap2d 800.0 -17000 0.000000000000 0.564416733220 0.000000000000 0.000000000000 +chr1 19077000 19078000 Tfap2d 800.0 -16000 0.001750000000 0.479773922990 1.048424685505 1.400000000000 +chr1 19078000 19079000 Tfap2d 800.0 -15000 0.003750000000 0.194792725125 2.095844170045 3.000000000000 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0.111345010622 2.607683457332 12.200000000000 +chr1 19089000 19090000 Tfap2d 800.0 -4000 0.030250000000 0.070053372377 3.038679093748 24.200000000000 +chr1 19090000 19091000 Tfap2d 800.0 -3000 0.048500000000 0.116001476304 2.250672297336 38.800000000000 +chr1 19091000 19092000 Tfap2d 800.0 -2000 0.073250000000 0.338737028716 1.094984444422 58.600000000000 +chr1 19092000 19093000 Tfap2d 800.0 -1000 0.076750000000 0.374378926737 1.003942141175 61.400000000000 +chr1 19093000 19094000 Tfap2d 800.0 0 0.079750000000 0.404870799436 1.002478777496 63.800000000000 +chr1 19094000 19095000 Tfap2d 800.0 1000 0.067250000000 0.446889499477 0.859426103017 53.800000000000 +chr1 19095000 19096000 Tfap2d 800.0 2000 0.051250000000 0.556122045330 0.749137676625 41.000000000000 +chr1 19096000 19097000 Tfap2d 800.0 3000 0.025000000000 0.369438523049 1.008414567688 20.000000000000 +chr1 19097000 19098000 Tfap2d 800.0 4000 0.020500000000 0.283239136753 1.310408702739 16.400000000000 +chr1 19098000 19099000 Tfap2d 800.0 5000 0.013500000000 0.374325768927 1.114735560201 10.800000000000 +chr1 19099000 19100000 Tfap2d 800.0 6000 0.010250000000 0.414401612828 0.979704411769 8.200000000000 +chr1 19100000 19101000 Tfap2d 800.0 7000 0.011500000000 0.329063377508 1.204226422500 9.200000000000 +chr1 19101000 19102000 Tfap2d 800.0 8000 0.011500000000 0.293232494412 1.320001464545 9.200000000000 +chr1 19102000 19103000 Tfap2d 800.0 9000 0.011750000000 0.261465466047 1.468086693474 9.400000000000 +chr1 19103000 19104000 Tfap2d 800.0 10000 0.010750000000 0.272164293758 1.483355271397 8.600000000000 +chr1 19104000 19105000 Tfap2d 800.0 11000 0.010250000000 0.226518323948 1.600689111498 8.200000000000 +chr1 19105000 19106000 Tfap2d 800.0 12000 0.008250000000 0.318572090835 1.385814863859 6.600000000000 +chr1 19106000 19107000 Tfap2d 800.0 13000 0.005750000000 0.456960792050 1.070610466834 4.600000000000 +chr1 19107000 19108000 Tfap2d 800.0 14000 0.005250000000 0.423473421595 1.081491883198 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0.225115312719 0.162646240224 0.400000000000 +chr1 19118000 19119000 Tfap2d 800.0 25000 0.000000000000 0.221629958422 0.000000000000 0.000000000000 +chr1 19119000 19120000 Tfap2d 800.0 26000 0.000000000000 0.253083049210 0.000000000000 0.000000000000 +chr1 19120000 19121000 Tfap2d 800.0 27000 0.000750000000 0.245782528167 0.294604510589 0.600000000000 +chr1 19121000 19122000 Tfap2d 800.0 28000 0.000750000000 0.257054437971 0.283247874151 0.600000000000 +chr1 19122000 19123000 Tfap2d 800.0 29000 0.001250000000 0.730150582959 0.496866795945 1.000000000000 +chr1 19123000 19124000 Tfap2d 800.0 30000 0.001750000000 0.732642811477 0.706574697058 1.400000000000 +chr1 19124000 19125000 Tfap2d 800.0 31000 0.002250000000 0.758317068786 0.905161684870 1.800000000000 +chr1 19125000 19126000 Tfap2d 800.0 32000 0.002750000000 0.480737541697 1.153682147360 2.200000000000 +chr1 19126000 19127000 Tfap2d 800.0 33000 0.003000000000 0.484322511884 1.279511523854 2.400000000000 +chr1 19127000 19128000 Tfap2d 800.0 34000 0.002500000000 0.481543605756 1.111814085462 2.000000000000 +chr1 19128000 19129000 Tfap2d 800.0 35000 0.002750000000 0.449902561688 1.293818679354 2.200000000000 +chr1 19129000 19130000 Tfap2d 800.0 36000 0.002250000000 0.731093851644 1.087770500930 1.800000000000 +chr1 19130000 19131000 Tfap2d 800.0 37000 0.001250000000 0.743077286604 0.619604724633 1.000000000000 +chr1 19131000 19132000 Tfap2d 800.0 38000 0.001000000000 0.281762440079 0.507773628084 0.800000000000 +chr1 19132000 19133000 Tfap2d 800.0 39000 0.001500000000 0.722688489844 0.766333205611 1.200000000000 +chr1 19133000 19134000 Tfap2d 800.0 40000 0.002000000000 0.741317064321 0.961326118464 1.600000000000 +chr1 19134000 19135000 Tfap2d 800.0 41000 0.002250000000 0.735204850266 1.100549008579 1.800000000000 +chr1 19135000 19136000 Tfap2d 800.0 42000 0.002500000000 0.430167489874 1.206882246590 2.000000000000 +chr1 19136000 19137000 Tfap2d 800.0 43000 0.003500000000 0.432759024319 1.763764372185 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0.003750000000 0.070033494126 3.479451601239 3.000000000000 +chr1 19205000 19206000 Tfap2d 800.0 112000 0.003750000000 0.066008586110 3.568923214524 3.000000000000 +chr1 19206000 19207000 Tfap2d 800.0 113000 0.004000000000 0.063559023410 3.907325514242 3.200000000000 +chr1 19207000 19208000 Tfap2d 800.0 114000 0.003000000000 0.194024901725 2.888145954204 2.400000000000 +chr1 19208000 19209000 Tfap2d 800.0 115000 0.002250000000 0.530333832375 2.185055029640 1.800000000000 +chr1 19209000 19210000 Tfap2d 800.0 116000 0.002000000000 0.494064335500 2.235567114714 1.600000000000 +chr1 19210000 19211000 Tfap2d 800.0 117000 0.003250000000 0.153296595403 3.707443066693 2.600000000000 +chr1 19211000 19212000 Tfap2d 800.0 118000 0.002750000000 0.150599678767 3.180637588552 2.200000000000 +chr1 19212000 19213000 Tfap2d 800.0 119000 0.003000000000 0.158720896687 3.387452543582 2.400000000000 +chr1 19213000 19214000 Tfap2d 800.0 120000 0.003250000000 0.159014735445 3.620646740040 2.600000000000 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0.038045805086 5.411363716616 3.600000000000 +chr1 19224000 19225000 Tfap2d 800.0 131000 0.003750000000 0.026250942062 4.898522060247 3.000000000000 +chr1 19225000 19226000 Tfap2d 800.0 132000 0.002750000000 0.124311097303 3.678809740720 2.200000000000 +chr1 19226000 19227000 Tfap2d 800.0 133000 0.003000000000 0.151641641426 3.620646738024 2.400000000000 +chr1 19227000 19228000 Tfap2d 800.0 134000 0.003250000000 0.143582745335 4.085182547149 2.600000000000 +chr1 19228000 19229000 Tfap2d 800.0 135000 0.002000000000 0.395911443930 2.633197629387 1.600000000000 +chr1 19229000 19230000 Tfap2d 800.0 136000 0.003250000000 0.150842735995 3.922367299526 2.600000000000 +chr1 19230000 19231000 Tfap2d 800.0 137000 0.003250000000 0.164772494749 3.657342484316 2.600000000000 +chr1 19231000 19232000 Tfap2d 800.0 138000 0.003500000000 0.130463229278 4.382888157748 2.800000000000 +chr1 19232000 19233000 Tfap2d 800.0 139000 0.003750000000 0.057301877416 4.398320860434 3.000000000000 +chr1 19233000 19234000 Tfap2d 800.0 140000 0.003500000000 0.179226643902 3.689393195582 2.800000000000 +chr1 19234000 19235000 Tfap2d 800.0 141000 0.002750000000 0.164399719481 3.126360496166 2.200000000000 +chr1 19235000 19236000 Tfap2d 800.0 142000 0.002500000000 0.144239961205 3.178430343770 2.000000000000 +chr1 19236000 19237000 Tfap2d 800.0 143000 0.002250000000 0.368027948962 2.725359544693 1.800000000000 +chr1 19237000 19238000 Tfap2d 800.0 144000 0.001250000000 0.369757348647 1.720555267451 1.000000000000 +chr1 19238000 19239000 Tfap2d 800.0 145000 0.000750000000 0.654163481416 1.249123125975 0.600000000000 +chr1 19239000 19240000 Tfap2d 800.0 146000 0.000500000000 0.637809455886 0.767510368762 0.400000000000 +chr1 19240000 19241000 Tfap2d 800.0 147000 0.000500000000 0.621469775934 0.730481359472 0.400000000000 +chr1 19241000 19242000 Tfap2d 800.0 148000 0.000750000000 0.608829914540 1.135566477299 0.600000000000 +chr1 19242000 19243000 Tfap2d 800.0 149000 0.001000000000 0.611099504790 1.556539719993 0.800000000000 +chr1 19243000 19244000 Tfap2d 800.0 150000 0.001000000000 0.594707930687 1.448258695209 0.800000000000 +chr1 19244000 19245000 Tfap2d 800.0 151000 0.001250000000 0.394934687243 1.909974197425 1.000000000000 +chr1 19245000 19246000 Tfap2d 800.0 152000 0.001250000000 0.406285280003 1.850552777510 1.000000000000 +chr1 19246000 19247000 Tfap2d 800.0 153000 0.000750000000 0.596420485199 1.120289798118 0.600000000000 +chr1 19247000 19248000 Tfap2d 800.0 154000 0.000500000000 0.606160024614 0.760501141597 0.400000000000 +chr1 19248000 19249000 Tfap2d 800.0 155000 0.000500000000 0.609612095406 0.736945796329 0.400000000000 +chr1 19249000 19250000 Tfap2d 800.0 156000 0.000000000000 0.613314445827 0.000000000000 0.000000000000 +chr1 19250000 19251000 Tfap2d 800.0 157000 0.000250000000 0.602751520183 0.345538900195 0.200000000000 +chr1 19251000 19252000 Tfap2d 800.0 158000 0.000250000000 0.585293824856 0.333099500149 0.200000000000 +chr1 19252000 19253000 Tfap2d 800.0 159000 0.000250000000 0.573814787091 0.324026751047 0.200000000000 +chr1 19253000 19254000 Tfap2d 800.0 160000 0.000250000000 0.559100492248 0.319060823790 0.200000000000 +chr1 19254000 19255000 Tfap2d 800.0 161000 0.000250000000 0.533506885425 0.300631317590 0.200000000000 +chr1 19255000 19256000 Tfap2d 800.0 162000 0.000000000000 0.591476571829 0.000000000000 0.000000000000 +chr1 19256000 19257000 Tfap2d 800.0 163000 0.000000000000 0.593731273297 0.000000000000 0.000000000000 +chr1 19257000 19258000 Tfap2d 800.0 164000 0.000000000000 0.604924746422 0.000000000000 0.000000000000 +chr1 19258000 19259000 Tfap2d 800.0 165000 0.000250000000 0.620870359018 0.383755184381 0.200000000000 +chr1 19259000 19260000 Tfap2d 800.0 166000 0.000500000000 0.653063136379 0.832748750650 0.400000000000 +chr1 19260000 19261000 Tfap2d 800.0 167000 0.000750000000 0.616215444951 1.195333134476 0.600000000000 +chr1 19261000 19262000 Tfap2d 800.0 168000 0.000750000000 0.616137376589 1.161975000232 0.600000000000 +chr1 19262000 19263000 Tfap2d 800.0 169000 0.001000000000 0.600847921629 1.399577730324 0.800000000000 +chr1 19263000 19264000 Tfap2d 800.0 170000 0.000750000000 0.585658029501 1.015547256684 0.600000000000 +chr1 19264000 19265000 Tfap2d 800.0 171000 0.000750000000 0.601961893812 1.028084877240 0.600000000000 +chr1 19265000 19266000 Tfap2d 800.0 172000 0.000500000000 0.591031149544 0.643049227908 0.400000000000 +chr1 19266000 19267000 Tfap2d 800.0 173000 0.000750000000 0.574110012150 0.983561516064 0.600000000000 +chr1 19267000 19268000 Tfap2d 800.0 174000 0.000500000000 0.594064541193 0.693957291245 0.400000000000 +chr1 19268000 19269000 Tfap2d 800.0 175000 0.000750000000 0.586742846341 1.076830279776 0.600000000000 +chr1 19269000 19270000 Tfap2d 800.0 176000 0.000750000000 0.580281241496 1.063083510150 0.600000000000 +chr1 19270000 19271000 Tfap2d 800.0 177000 0.000750000000 0.600664600573 1.135566477299 0.600000000000 +chr1 19271000 19272000 Tfap2d 800.0 178000 0.000500000000 0.611923543314 0.785612028545 0.400000000000 +chr1 19272000 19273000 Tfap2d 800.0 179000 0.000500000000 0.616982108456 0.800719952292 0.400000000000 +chr1 19273000 19274000 Tfap2d 800.0 180000 0.000250000000 0.632990312064 0.422715101192 0.200000000000 +chr1 19274000 19275000 Tfap2d 800.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000 +chr1 19275000 19276000 Tfap2d 800.0 182000 0.000250000000 0.649572741436 0.447714381549 0.200000000000 +chr1 19276000 19277000 Tfap2d 800.0 183000 0.000250000000 0.640768493097 0.433723307028 0.200000000000 +chr1 19277000 19278000 Tfap2d 800.0 184000 0.000750000000 0.624583606023 1.218656708021 0.600000000000 +chr1 19278000 19279000 Tfap2d 800.0 185000 0.000750000000 0.617559413959 1.201079928437 0.600000000000 +chr1 19279000 19280000 Tfap2d 800.0 186000 0.000750000000 0.647906480781 1.328854387687 0.600000000000 +chr1 19280000 19281000 Tfap2d 800.0 187000 0.000500000000 0.651241359569 0.900268918608 0.400000000000 +chr1 19281000 19282000 Tfap2d 800.0 188000 0.000500000000 0.647869186187 0.890640373956 0.400000000000 +chr1 19282000 19283000 Tfap2d 800.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 800.0 190000 0.000250000000 0.671941112135 0.486987573219 0.200000000000 +chr1 19284000 19285000 Tfap2d 800.0 191000 0.000250000000 0.658749839996 0.462638194377 0.200000000000 +chr1 19285000 19286000 Tfap2d 800.0 192000 0.000250000000 0.655383997647 0.457554258138 0.200000000000 +chr1 19286000 19287000 Tfap2d 800.0 193000 0.000500000000 0.676994533785 0.991367559904 0.400000000000 +chr1 19287000 19288000 Tfap2d 800.0 194000 0.000500000000 0.669325066593 0.962715318068 0.400000000000 +chr1 19288000 19289000 Tfap2d 800.0 195000 0.000250000000 0.685162890895 0.510888804001 0.200000000000 +chr1 19289000 19290000 Tfap2d 800.0 196000 0.000250000000 0.685254654751 0.510888804001 0.200000000000 +chr1 19290000 19291000 Tfap2d 800.0 197000 0.000250000000 0.664789163653 0.473152698875 0.200000000000 +chr1 19291000 19292000 Tfap2d 800.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 800.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 800.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_1/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.2-dev +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 978.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 978.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 978.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 978.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 978.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 978.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 978.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 978.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 978.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 978.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 978.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 978.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 978.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 978.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 978.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 4302000 4303000 Sox17 978.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 4303000 4304000 Sox17 978.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 4304000 4305000 Sox17 978.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 4305000 4306000 Sox17 978.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 4306000 4307000 Sox17 978.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4307000 4308000 Sox17 978.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 4308000 4309000 Sox17 978.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 4309000 4310000 Sox17 978.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 4310000 4311000 Sox17 978.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 4311000 4312000 Sox17 978.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 4312000 4313000 Sox17 978.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 4313000 4314000 Sox17 978.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 4314000 4315000 Sox17 978.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 4315000 4316000 Sox17 978.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 4316000 4317000 Sox17 978.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 4317000 4318000 Sox17 978.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 4318000 4319000 Sox17 978.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 4319000 4320000 Sox17 978.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 4320000 4321000 Sox17 978.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 4321000 4322000 Sox17 978.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 4322000 4323000 Sox17 978.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 4323000 4324000 Sox17 978.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 4324000 4325000 Sox17 978.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 4325000 4326000 Sox17 978.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 4326000 4327000 Sox17 978.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 4327000 4328000 Sox17 978.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 4328000 4329000 Sox17 978.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 4329000 4330000 Sox17 978.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 4330000 4331000 Sox17 978.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 4331000 4332000 Sox17 978.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 4332000 4333000 Sox17 978.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 4333000 4334000 Sox17 978.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 4334000 4335000 Sox17 978.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 4335000 4336000 Sox17 978.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 4336000 4337000 Sox17 978.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 4337000 4338000 Sox17 978.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 4338000 4339000 Sox17 978.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 4339000 4340000 Sox17 978.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 4340000 4341000 Sox17 978.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 4341000 4342000 Sox17 978.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 4342000 4343000 Sox17 978.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 4343000 4344000 Sox17 978.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 4344000 4345000 Sox17 978.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 4345000 4346000 Sox17 978.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 4346000 4347000 Sox17 978.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 4347000 4348000 Sox17 978.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 4348000 4349000 Sox17 978.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 4349000 4350000 Sox17 978.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 4350000 4351000 Sox17 978.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 4351000 4352000 Sox17 978.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 4352000 4353000 Sox17 978.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 4353000 4354000 Sox17 978.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 4354000 4355000 Sox17 978.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 4355000 4356000 Sox17 978.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 4356000 4357000 Sox17 978.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 4357000 4358000 Sox17 978.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 4358000 4359000 Sox17 978.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 4359000 4360000 Sox17 978.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 4360000 4361000 Sox17 978.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 4361000 4362000 Sox17 978.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 4362000 4363000 Sox17 978.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 4363000 4364000 Sox17 978.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 4364000 4365000 Sox17 978.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 4365000 4366000 Sox17 978.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 4366000 4367000 Sox17 978.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 4367000 4368000 Sox17 978.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 4368000 4369000 Sox17 978.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 4369000 4370000 Sox17 978.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 4370000 4371000 Sox17 978.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 4371000 4372000 Sox17 978.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 4372000 4373000 Sox17 978.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000 +chr1 4373000 4374000 Sox17 978.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000 +chr1 4374000 4375000 Sox17 978.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000 +chr1 4375000 4376000 Sox17 978.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 4376000 4377000 Sox17 978.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000 +chr1 4377000 4378000 Sox17 978.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 4378000 4379000 Sox17 978.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 4379000 4380000 Sox17 978.0 -108000 0.000000000000 0.785369993572 0.000000000000 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# FL-E13-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 673.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 673.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 14101000 14102000 Eya1 673.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 14102000 14103000 Eya1 673.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 14103000 14104000 Eya1 673.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 14104000 14105000 Eya1 673.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 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1.204251218952 1.000000000000 +chr1 14398000 14399000 Eya1 673.0 98000 0.001783060921 0.545294386249 1.410776013193 1.200000000000 +chr1 14399000 14400000 Eya1 673.0 99000 0.002080237741 0.533937799572 1.767668754158 1.400000000000 +chr1 14400000 14401000 Eya1 673.0 100000 0.001485884101 0.514440152115 1.410106128595 1.000000000000 +chr1 14401000 14402000 Eya1 673.0 101000 0.000594353640 0.476647654186 0.603594208412 0.400000000000 +chr1 14402000 14403000 Eya1 673.0 102000 0.000594353640 0.458905220217 0.587474482247 0.400000000000 +chr1 14403000 14404000 Eya1 673.0 103000 0.000297176820 0.494251471435 0.324555574533 0.200000000000 +chr1 14404000 14405000 Eya1 673.0 104000 0.000000000000 0.496762683299 0.000000000000 0.000000000000 +chr1 14405000 14406000 Eya1 673.0 105000 0.000594353640 0.490944103656 0.592751199195 0.400000000000 +chr1 14406000 14407000 Eya1 673.0 106000 0.000594353640 0.505391527259 0.578885673960 0.400000000000 +chr1 14407000 14408000 Eya1 673.0 107000 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14418000 Eya1 673.0 117000 0.000891530461 0.523376482067 1.017014899996 0.600000000000 +chr1 14418000 14419000 Eya1 673.0 118000 0.000594353640 0.529451256365 0.687426738036 0.400000000000 +chr1 14419000 14420000 Eya1 673.0 119000 0.000594353640 0.533356831096 0.671114917005 0.400000000000 +chr1 14420000 14421000 Eya1 673.0 120000 0.000594353640 0.516584121708 0.662136790955 0.400000000000 +chr1 14421000 14422000 Eya1 673.0 121000 0.000297176820 0.535771528777 0.325623191563 0.200000000000 +chr1 14422000 14423000 Eya1 673.0 122000 0.000594353640 0.530490537983 0.668847636862 0.400000000000 +chr1 14423000 14424000 Eya1 673.0 123000 0.000594353640 0.530562527645 0.682685863943 0.400000000000 +chr1 14424000 14425000 Eya1 673.0 124000 0.000594353640 0.545553903451 0.725197437366 0.400000000000 +chr1 14425000 14426000 Eya1 673.0 125000 0.000594353640 0.564891705893 0.791915602137 0.400000000000 +chr1 14426000 14427000 Eya1 673.0 126000 0.001188707281 0.540351446443 1.477454480806 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14457000 Eya1 673.0 156000 0.000594353640 0.613314445827 0.876012833675 0.400000000000 +chr1 14457000 14458000 Eya1 673.0 157000 0.000594353640 0.602751520183 0.821489212945 0.400000000000 +chr1 14458000 14459000 Eya1 673.0 158000 0.001188707281 0.585293824856 1.583831204275 0.800000000000 +chr1 14459000 14460000 Eya1 673.0 159000 0.000594353640 0.573814787091 0.770345916308 0.400000000000 +chr1 14460000 14461000 Eya1 673.0 160000 0.001188707281 0.559100492248 1.517079697070 0.800000000000 +chr1 14461000 14462000 Eya1 673.0 161000 0.001188707281 0.533506885425 1.429450544260 0.800000000000 +chr1 14462000 14463000 Eya1 673.0 162000 0.001188707281 0.591476571829 1.616154290340 0.800000000000 +chr1 14463000 14464000 Eya1 673.0 163000 0.000594353640 0.593731273297 0.821489212945 0.400000000000 +chr1 14464000 14465000 Eya1 673.0 164000 0.000594353640 0.604924746422 0.857051516792 0.400000000000 +chr1 14465000 14466000 Eya1 673.0 165000 0.000000000000 0.620870359018 0.000000000000 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0.586742846341 0.000000000000 0.000000000000 +chr1 14476000 14477000 Eya1 673.0 176000 0.000297176820 0.580281241496 0.421231702882 0.200000000000 +chr1 14477000 14478000 Eya1 673.0 177000 0.000297176820 0.600664600573 0.449952046478 0.200000000000 +chr1 14478000 14479000 Eya1 673.0 178000 0.000594353640 0.611923543314 0.933862738240 0.400000000000 +chr1 14479000 14480000 Eya1 673.0 179000 0.000594353640 0.616982108456 0.951821637197 0.400000000000 +chr1 14480000 14481000 Eya1 673.0 180000 0.001485884101 0.367009687936 2.512422592521 1.000000000000 +chr1 14481000 14482000 Eya1 673.0 181000 0.001188707281 0.637219432588 2.020192860178 0.800000000000 +chr1 14482000 14483000 Eya1 673.0 182000 0.001188707281 0.649572741436 2.128805380321 0.800000000000 +chr1 14483000 14484000 Eya1 673.0 183000 0.001783060921 0.359231506903 3.093420317586 1.200000000000 +chr1 14484000 14485000 Eya1 673.0 184000 0.002080237741 0.375416393977 3.380127570538 1.400000000000 +chr1 14485000 14486000 Eya1 673.0 185000 0.001188707281 0.617559413959 1.903643274393 0.800000000000 +chr1 14486000 14487000 Eya1 673.0 186000 0.001188707281 0.647906480781 2.106158514412 0.800000000000 +chr1 14487000 14488000 Eya1 673.0 187000 0.001188707281 0.651241359569 2.140312436513 0.800000000000 +chr1 14488000 14489000 Eya1 673.0 188000 0.000594353640 0.647869186187 1.058710697124 0.400000000000 +chr1 14489000 14490000 Eya1 673.0 189000 0.000297176820 0.671654971880 0.575520059550 0.200000000000 +chr1 14490000 14491000 Eya1 673.0 190000 0.000297176820 0.671941112135 0.578885673960 0.200000000000 +chr1 14491000 14492000 Eya1 673.0 191000 0.002080237741 0.341250160004 3.849589730333 1.400000000000 +chr1 14492000 14493000 Eya1 673.0 192000 0.003268945022 0.068166431915 5.982878858272 2.200000000000 +chr1 14493000 14494000 Eya1 673.0 193000 0.002971768202 0.059322876246 5.892229182196 2.000000000000 +chr1 14494000 14495000 Eya1 673.0 194000 0.003268945022 0.062511655285 6.294126893758 2.200000000000 +chr1 14495000 14496000 Eya1 673.0 195000 0.003268945022 0.056441264815 6.680269651133 2.200000000000 +chr1 14496000 14497000 Eya1 673.0 196000 0.002971768202 0.056496760292 6.072972410121 2.000000000000 +chr1 14497000 14498000 Eya1 673.0 197000 0.002080237741 0.335210836347 3.937080406684 1.400000000000 +chr1 14498000 14499000 Eya1 673.0 198000 0.002971768202 0.083110512066 4.852424033528 2.000000000000 +chr1 14499000 14500000 Eya1 673.0 199000 0.003343239227 0.073447408129 5.830530441735 2.250000000000 +chr1 14500000 14501000 Eya1 673.0 200000 0.004457652303 1.000000000000 7.575723225668 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# FL-E13-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 472.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 472.0 -200000 0.001412429379 0.880044890460 8.554173074049 0.666666666667 +chr1 18894000 18895000 Tfap2d 472.0 -199000 0.001059322034 0.852151439574 5.040852007510 0.500000000000 +chr1 18895000 18896000 Tfap2d 472.0 -198000 0.000847457627 0.820756603944 3.282415254892 0.400000000000 +chr1 18896000 18897000 Tfap2d 472.0 -197000 0.000847457627 0.814190727178 3.136530131373 0.400000000000 +chr1 18897000 18898000 Tfap2d 472.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 472.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 472.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 472.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 472.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 472.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 472.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 472.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 472.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 472.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 472.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 18908000 18909000 Tfap2d 472.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 18909000 18910000 Tfap2d 472.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 18910000 18911000 Tfap2d 472.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 18911000 18912000 Tfap2d 472.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 18912000 18913000 Tfap2d 472.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18913000 18914000 Tfap2d 472.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 18914000 18915000 Tfap2d 472.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 18915000 18916000 Tfap2d 472.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 18916000 18917000 Tfap2d 472.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 18917000 18918000 Tfap2d 472.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 18918000 18919000 Tfap2d 472.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 18919000 18920000 Tfap2d 472.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 18920000 18921000 Tfap2d 472.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 18921000 18922000 Tfap2d 472.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 18922000 18923000 Tfap2d 472.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 18923000 18924000 Tfap2d 472.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 18924000 18925000 Tfap2d 472.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 18925000 18926000 Tfap2d 472.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 18926000 18927000 Tfap2d 472.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 18927000 18928000 Tfap2d 472.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 18928000 18929000 Tfap2d 472.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 18929000 18930000 Tfap2d 472.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 18930000 18931000 Tfap2d 472.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 18931000 18932000 Tfap2d 472.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 18932000 18933000 Tfap2d 472.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 18933000 18934000 Tfap2d 472.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 18934000 18935000 Tfap2d 472.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 18935000 18936000 Tfap2d 472.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 18936000 18937000 Tfap2d 472.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 18937000 18938000 Tfap2d 472.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 18938000 18939000 Tfap2d 472.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 18939000 18940000 Tfap2d 472.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 18940000 18941000 Tfap2d 472.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 18941000 18942000 Tfap2d 472.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 18942000 18943000 Tfap2d 472.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 18943000 18944000 Tfap2d 472.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 18944000 18945000 Tfap2d 472.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 18945000 18946000 Tfap2d 472.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 18946000 18947000 Tfap2d 472.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 18947000 18948000 Tfap2d 472.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 18948000 18949000 Tfap2d 472.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 18949000 18950000 Tfap2d 472.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 18950000 18951000 Tfap2d 472.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 18951000 18952000 Tfap2d 472.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 18952000 18953000 Tfap2d 472.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 18953000 18954000 Tfap2d 472.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 18954000 18955000 Tfap2d 472.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 18955000 18956000 Tfap2d 472.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 18956000 18957000 Tfap2d 472.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 18957000 18958000 Tfap2d 472.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 18958000 18959000 Tfap2d 472.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 18959000 18960000 Tfap2d 472.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 18960000 18961000 Tfap2d 472.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 18961000 18962000 Tfap2d 472.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 18962000 18963000 Tfap2d 472.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 18963000 18964000 Tfap2d 472.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 18964000 18965000 Tfap2d 472.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 18965000 18966000 Tfap2d 472.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 18966000 18967000 Tfap2d 472.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 18967000 18968000 Tfap2d 472.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 18968000 18969000 Tfap2d 472.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 18969000 18970000 Tfap2d 472.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 18970000 18971000 Tfap2d 472.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 18971000 18972000 Tfap2d 472.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 18972000 18973000 Tfap2d 472.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 18973000 18974000 Tfap2d 472.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 18974000 18975000 Tfap2d 472.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 18975000 18976000 Tfap2d 472.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 18976000 18977000 Tfap2d 472.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 18977000 18978000 Tfap2d 472.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 18978000 18979000 Tfap2d 472.0 -115000 0.001271186441 0.757379810911 3.257165906583 0.600000000000 +chr1 18979000 18980000 Tfap2d 472.0 -114000 0.001271186441 0.773895809279 3.470750557945 0.600000000000 +chr1 18980000 18981000 Tfap2d 472.0 -113000 0.001271186441 0.780251801078 3.814698814531 0.600000000000 +chr1 18981000 18982000 Tfap2d 472.0 -112000 0.001271186441 0.809192563048 4.602517039860 0.600000000000 +chr1 18982000 18983000 Tfap2d 472.0 -111000 0.001271186441 0.805959066383 4.553027608970 0.600000000000 +chr1 18983000 18984000 Tfap2d 472.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 18984000 18985000 Tfap2d 472.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 18985000 18986000 Tfap2d 472.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 18986000 18987000 Tfap2d 472.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000 +chr1 18987000 18988000 Tfap2d 472.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 18988000 18989000 Tfap2d 472.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 18989000 18990000 Tfap2d 472.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 18990000 18991000 Tfap2d 472.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000 +chr1 18991000 18992000 Tfap2d 472.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 18992000 18993000 Tfap2d 472.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 18993000 18994000 Tfap2d 472.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000 +chr1 18994000 18995000 Tfap2d 472.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000 +chr1 18995000 18996000 Tfap2d 472.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 18996000 18997000 Tfap2d 472.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 18997000 18998000 Tfap2d 472.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 18998000 18999000 Tfap2d 472.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 18999000 19000000 Tfap2d 472.0 -94000 0.000423728814 0.745179566394 1.102686374757 0.200000000000 +chr1 19000000 19001000 Tfap2d 472.0 -93000 0.000423728814 0.740519396446 1.061231999455 0.200000000000 +chr1 19001000 19002000 Tfap2d 472.0 -92000 0.000423728814 0.723302632894 0.779800308873 0.200000000000 +chr1 19002000 19003000 Tfap2d 472.0 -91000 0.000423728814 0.723801019412 0.735124249200 0.200000000000 +chr1 19003000 19004000 Tfap2d 472.0 -90000 0.000423728814 0.727642253997 0.727545648641 0.200000000000 +chr1 19004000 19005000 Tfap2d 472.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000 +chr1 19005000 19006000 Tfap2d 472.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000 +chr1 19006000 19007000 Tfap2d 472.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000 +chr1 19007000 19008000 Tfap2d 472.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000 +chr1 19008000 19009000 Tfap2d 472.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000 +chr1 19009000 19010000 Tfap2d 472.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000 +chr1 19010000 19011000 Tfap2d 472.0 -83000 0.000000000000 0.774521391995 0.000000000000 0.000000000000 +chr1 19011000 19012000 Tfap2d 472.0 -82000 0.000000000000 0.783854637009 0.000000000000 0.000000000000 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19032000 Tfap2d 472.0 -62000 0.000000000000 0.714104264339 0.000000000000 0.000000000000 +chr1 19032000 19033000 Tfap2d 472.0 -61000 0.000000000000 0.719520193233 0.000000000000 0.000000000000 +chr1 19033000 19034000 Tfap2d 472.0 -60000 0.000000000000 0.706118755048 0.000000000000 0.000000000000 +chr1 19034000 19035000 Tfap2d 472.0 -59000 0.000000000000 0.694795175639 0.000000000000 0.000000000000 +chr1 19035000 19036000 Tfap2d 472.0 -58000 0.000000000000 0.677279626754 0.000000000000 0.000000000000 +chr1 19036000 19037000 Tfap2d 472.0 -57000 0.000000000000 0.660669632705 0.000000000000 0.000000000000 +chr1 19037000 19038000 Tfap2d 472.0 -56000 0.000000000000 0.654051782916 0.000000000000 0.000000000000 +chr1 19038000 19039000 Tfap2d 472.0 -55000 0.000000000000 0.645975994037 0.000000000000 0.000000000000 +chr1 19039000 19040000 Tfap2d 472.0 -54000 0.000000000000 0.633180473855 0.000000000000 0.000000000000 +chr1 19040000 19041000 Tfap2d 472.0 -53000 0.000000000000 0.617831075012 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Tfap2d 472.0 5000 0.017796610169 0.464125883935 1.469519570887 8.400000000000 +chr1 19099000 19100000 Tfap2d 472.0 6000 0.012288135593 0.599920722050 1.174511283228 5.800000000000 +chr1 19100000 19101000 Tfap2d 472.0 7000 0.009745762712 0.648644847125 1.020530866525 4.600000000000 +chr1 19101000 19102000 Tfap2d 472.0 8000 0.010169491525 0.617313437581 1.167282061499 4.800000000000 +chr1 19102000 19103000 Tfap2d 472.0 9000 0.011440677966 0.505323631373 1.429438900967 5.400000000000 +chr1 19103000 19104000 Tfap2d 472.0 10000 0.010593220339 0.471943885135 1.461721788921 5.000000000000 +chr1 19104000 19105000 Tfap2d 472.0 11000 0.012288135593 0.426093076221 1.918974131188 5.800000000000 +chr1 19105000 19106000 Tfap2d 472.0 12000 0.010169491525 0.493994843515 1.708246365312 4.800000000000 +chr1 19106000 19107000 Tfap2d 472.0 13000 0.007203389831 0.575676120188 1.341221660736 3.400000000000 +chr1 19107000 19108000 Tfap2d 472.0 14000 0.007203389831 0.549873642111 1.483887168230 3.400000000000 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0.137835796800 0.200000000000 +chr1 19118000 19119000 Tfap2d 472.0 25000 0.000000000000 0.221629958422 0.000000000000 0.000000000000 +chr1 19119000 19120000 Tfap2d 472.0 26000 0.000000000000 0.253083049210 0.000000000000 0.000000000000 +chr1 19120000 19121000 Tfap2d 472.0 27000 0.000000000000 0.245782528167 0.000000000000 0.000000000000 +chr1 19121000 19122000 Tfap2d 472.0 28000 0.000000000000 0.257054437971 0.000000000000 0.000000000000 +chr1 19122000 19123000 Tfap2d 472.0 29000 0.000000000000 0.269849417041 0.000000000000 0.000000000000 +chr1 19123000 19124000 Tfap2d 472.0 30000 0.000000000000 0.267357188523 0.000000000000 0.000000000000 +chr1 19124000 19125000 Tfap2d 472.0 31000 0.002118644068 0.758317068786 0.852317970687 1.000000000000 +chr1 19125000 19126000 Tfap2d 472.0 32000 0.003813559322 0.746203194231 1.599867384629 1.800000000000 +chr1 19126000 19127000 Tfap2d 472.0 33000 0.004237288136 0.484322511884 1.807219666460 2.000000000000 +chr1 19127000 19128000 Tfap2d 472.0 34000 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19137000 19138000 Tfap2d 472.0 44000 0.003389830508 0.727364443818 1.839007894971 1.600000000000 +chr1 19138000 19139000 Tfap2d 472.0 45000 0.001694915254 0.330403958794 1.020932050432 0.800000000000 +chr1 19139000 19140000 Tfap2d 472.0 46000 0.000847457627 0.354229170518 0.511390782515 0.400000000000 +chr1 19140000 19141000 Tfap2d 472.0 47000 0.000423728814 0.385407333559 0.267825153582 0.200000000000 +chr1 19141000 19142000 Tfap2d 472.0 48000 0.000000000000 0.404372467862 0.000000000000 0.000000000000 +chr1 19142000 19143000 Tfap2d 472.0 49000 0.000000000000 0.413849789054 0.000000000000 0.000000000000 +chr1 19143000 19144000 Tfap2d 472.0 50000 0.000423728814 0.397832458678 0.262349174564 0.200000000000 +chr1 19144000 19145000 Tfap2d 472.0 51000 0.001271186441 0.392072772958 0.797422914856 0.600000000000 +chr1 19145000 19146000 Tfap2d 472.0 52000 0.002118644068 0.612204475076 1.299667181455 1.000000000000 +chr1 19146000 19147000 Tfap2d 472.0 53000 0.002118644068 0.618352766870 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0.001694915254 0.408005877354 1.246303363398 0.800000000000 +chr1 19157000 19158000 Tfap2d 472.0 64000 0.002118644068 0.602962162524 1.564787759528 1.000000000000 +chr1 19158000 19159000 Tfap2d 472.0 65000 0.002966101695 0.602317369319 2.313833704394 1.400000000000 +chr1 19159000 19160000 Tfap2d 472.0 66000 0.001694915254 0.438277764764 1.447629291815 0.800000000000 +chr1 19160000 19161000 Tfap2d 472.0 67000 0.002118644068 0.567560882986 1.729704116472 1.000000000000 +chr1 19161000 19162000 Tfap2d 472.0 68000 0.002118644068 0.547265021096 1.759898452895 1.000000000000 +chr1 19162000 19163000 Tfap2d 472.0 69000 0.001694915254 0.465980642540 1.394013391721 0.800000000000 +chr1 19163000 19164000 Tfap2d 472.0 70000 0.000423728814 0.444796187147 0.341752677703 0.200000000000 +chr1 19164000 19165000 Tfap2d 472.0 71000 0.000847457627 0.428059180779 0.661095344113 0.400000000000 +chr1 19165000 19166000 Tfap2d 472.0 72000 0.000423728814 0.412214629831 0.337664726984 0.200000000000 +chr1 19166000 19167000 Tfap2d 472.0 73000 0.000423728814 0.409759647919 0.349365979986 0.200000000000 +chr1 19167000 19168000 Tfap2d 472.0 74000 0.000423728814 0.393442654531 0.336056799968 0.200000000000 +chr1 19168000 19169000 Tfap2d 472.0 75000 0.000423728814 0.408748776277 0.327479944218 0.200000000000 +chr1 19169000 19170000 Tfap2d 472.0 76000 0.000423728814 0.414669054354 0.325216257950 0.200000000000 +chr1 19170000 19171000 Tfap2d 472.0 77000 0.000847457627 0.420440038855 0.630106499627 0.400000000000 +chr1 19171000 19172000 Tfap2d 472.0 78000 0.000847457627 0.423235388129 0.693581601507 0.400000000000 +chr1 19172000 19173000 Tfap2d 472.0 79000 0.000847457627 0.424768297386 0.703959381158 0.400000000000 +chr1 19173000 19174000 Tfap2d 472.0 80000 0.000847457627 0.458578421689 0.740912629804 0.400000000000 +chr1 19174000 19175000 Tfap2d 472.0 81000 0.000847457627 0.452159184220 0.721963457541 0.400000000000 +chr1 19175000 19176000 Tfap2d 472.0 82000 0.000423728814 0.468337454947 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19195000 19196000 Tfap2d 472.0 102000 0.000847457627 0.458905220217 0.837648996932 0.400000000000 +chr1 19196000 19197000 Tfap2d 472.0 103000 0.000847457627 0.494251471435 0.925533481613 0.400000000000 +chr1 19197000 19198000 Tfap2d 472.0 104000 0.001694915254 0.496762683299 1.764298198693 0.800000000000 +chr1 19198000 19199000 Tfap2d 472.0 105000 0.002118644068 0.509055896344 2.112931975945 1.000000000000 +chr1 19199000 19200000 Tfap2d 472.0 106000 0.002118644068 0.494608472741 2.063506666181 1.000000000000 +chr1 19200000 19201000 Tfap2d 472.0 107000 0.002118644068 0.499149741114 1.982357527016 1.000000000000 +chr1 19201000 19202000 Tfap2d 472.0 108000 0.002542372881 0.503477555567 2.320172973657 1.200000000000 +chr1 19202000 19203000 Tfap2d 472.0 109000 0.001271186441 0.499669178563 1.202930590359 0.600000000000 +chr1 19203000 19204000 Tfap2d 472.0 110000 0.000847457627 0.503445250814 0.830257976313 0.400000000000 +chr1 19204000 19205000 Tfap2d 472.0 111000 0.001271186441 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472.0 140000 0.001271186441 0.584686184662 1.339973315587 0.600000000000 +chr1 19234000 19235000 Tfap2d 472.0 141000 0.000847457627 0.604143773708 0.963439290036 0.400000000000 +chr1 19235000 19236000 Tfap2d 472.0 142000 0.000423728814 0.632888736121 0.538717007419 0.200000000000 +chr1 19236000 19237000 Tfap2d 472.0 143000 0.001271186441 0.631972051038 1.539751155194 0.600000000000 +chr1 19237000 19238000 Tfap2d 472.0 144000 0.001271186441 0.630242651353 1.749717221137 0.600000000000 +chr1 19238000 19239000 Tfap2d 472.0 145000 0.001271186441 0.654163481416 2.117157840635 0.600000000000 +chr1 19239000 19240000 Tfap2d 472.0 146000 0.001694915254 0.637809455886 2.601730063600 0.800000000000 +chr1 19240000 19241000 Tfap2d 472.0 147000 0.001271186441 0.621469775934 1.857155998658 0.600000000000 +chr1 19241000 19242000 Tfap2d 472.0 148000 0.000423728814 0.608829914540 0.641562981525 0.200000000000 +chr1 19242000 19243000 Tfap2d 472.0 149000 0.000423728814 0.611099504790 0.659550728811 0.200000000000 +chr1 19243000 19244000 Tfap2d 472.0 150000 0.000847457627 0.594707930687 1.227337877296 0.400000000000 +chr1 19244000 19245000 Tfap2d 472.0 151000 0.001271186441 0.605065312757 1.942346641449 0.600000000000 +chr1 19245000 19246000 Tfap2d 472.0 152000 0.001271186441 0.593714719997 1.881918078824 0.600000000000 +chr1 19246000 19247000 Tfap2d 472.0 153000 0.002118644068 0.403579514801 3.164660446662 1.000000000000 +chr1 19247000 19248000 Tfap2d 472.0 154000 0.002118644068 0.393839975386 3.222462464392 1.000000000000 +chr1 19248000 19249000 Tfap2d 472.0 155000 0.001694915254 0.609612095406 2.498121343489 0.800000000000 +chr1 19249000 19250000 Tfap2d 472.0 156000 0.000847457627 0.613314445827 1.249060671745 0.400000000000 +chr1 19250000 19251000 Tfap2d 472.0 157000 0.000847457627 0.602751520183 1.171318305746 0.400000000000 +chr1 19251000 19252000 Tfap2d 472.0 158000 0.000000000000 0.585293824856 0.000000000000 0.000000000000 +chr1 19252000 19253000 Tfap2d 472.0 159000 0.000847457627 0.573814787091 1.098395766262 0.400000000000 +chr1 19253000 19254000 Tfap2d 472.0 160000 0.000847457627 0.559100492248 1.081562114542 0.400000000000 +chr1 19254000 19255000 Tfap2d 472.0 161000 0.001694915254 0.533506885425 2.038178424337 0.800000000000 +chr1 19255000 19256000 Tfap2d 472.0 162000 0.001694915254 0.591476571829 2.304389486014 0.800000000000 +chr1 19256000 19257000 Tfap2d 472.0 163000 0.002542372881 0.406268726703 3.513954917238 1.200000000000 +chr1 19257000 19258000 Tfap2d 472.0 164000 0.002118644068 0.395075253578 3.055061815685 1.000000000000 +chr1 19258000 19259000 Tfap2d 472.0 165000 0.002118644068 0.379129640982 3.252162579500 1.000000000000 +chr1 19259000 19260000 Tfap2d 472.0 166000 0.001694915254 0.653063136379 2.822877120847 0.800000000000 +chr1 19260000 19261000 Tfap2d 472.0 167000 0.001694915254 0.616215444951 2.701317818024 0.800000000000 +chr1 19261000 19262000 Tfap2d 472.0 168000 0.000847457627 0.616137376589 1.312966101957 0.400000000000 +chr1 19262000 19263000 Tfap2d 472.0 169000 0.000423728814 0.600847921629 0.593041411154 0.200000000000 +chr1 19263000 19264000 Tfap2d 472.0 170000 0.000423728814 0.585658029501 0.573755512251 0.200000000000 +chr1 19264000 19265000 Tfap2d 472.0 171000 0.000000000000 0.601961893812 0.000000000000 0.000000000000 +chr1 19265000 19266000 Tfap2d 472.0 172000 0.000000000000 0.591031149544 0.000000000000 0.000000000000 +chr1 19266000 19267000 Tfap2d 472.0 173000 0.000000000000 0.574110012150 0.000000000000 0.000000000000 +chr1 19267000 19268000 Tfap2d 472.0 174000 0.000000000000 0.594064541193 0.000000000000 0.000000000000 +chr1 19268000 19269000 Tfap2d 472.0 175000 0.000423728814 0.586742846341 0.608378689139 0.200000000000 +chr1 19269000 19270000 Tfap2d 472.0 176000 0.000423728814 0.580281241496 0.600612152627 0.200000000000 +chr1 19270000 19271000 Tfap2d 472.0 177000 0.000423728814 0.600664600573 0.641562981525 0.200000000000 +chr1 19271000 19272000 Tfap2d 472.0 178000 0.000423728814 0.611923543314 0.665772905546 0.200000000000 +chr1 19272000 19273000 Tfap2d 472.0 179000 0.000423728814 0.616982108456 0.678576230756 0.200000000000 +chr1 19273000 19274000 Tfap2d 472.0 180000 0.000000000000 0.632990312064 0.000000000000 0.000000000000 +chr1 19274000 19275000 Tfap2d 472.0 181000 0.000000000000 0.637219432588 0.000000000000 0.000000000000 +chr1 19275000 19276000 Tfap2d 472.0 182000 0.000423728814 0.649572741436 0.758837934828 0.200000000000 +chr1 19276000 19277000 Tfap2d 472.0 183000 0.000423728814 0.640768493097 0.735124249200 0.200000000000 +chr1 19277000 19278000 Tfap2d 472.0 184000 0.000423728814 0.624583606023 0.688506614701 0.200000000000 +chr1 19278000 19279000 Tfap2d 472.0 185000 0.000423728814 0.617559413959 0.678576230756 0.200000000000 +chr1 19279000 19280000 Tfap2d 472.0 186000 0.000423728814 0.647906480781 0.750765190784 0.200000000000 +chr1 19280000 19281000 Tfap2d 472.0 187000 0.000000000000 0.651241359569 0.000000000000 0.000000000000 +chr1 19281000 19282000 Tfap2d 472.0 188000 0.000000000000 0.647869186187 0.000000000000 0.000000000000 +chr1 19282000 19283000 Tfap2d 472.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 472.0 190000 0.000000000000 0.671941112135 0.000000000000 0.000000000000 +chr1 19284000 19285000 Tfap2d 472.0 191000 0.000000000000 0.658749839996 0.000000000000 0.000000000000 +chr1 19285000 19286000 Tfap2d 472.0 192000 0.000000000000 0.655383997647 0.000000000000 0.000000000000 +chr1 19286000 19287000 Tfap2d 472.0 193000 0.000000000000 0.676994533785 0.000000000000 0.000000000000 +chr1 19287000 19288000 Tfap2d 472.0 194000 0.000000000000 0.669325066593 0.000000000000 0.000000000000 +chr1 19288000 19289000 Tfap2d 472.0 195000 0.000000000000 0.685162890895 0.000000000000 0.000000000000 +chr1 19289000 19290000 Tfap2d 472.0 196000 0.000000000000 0.685254654751 0.000000000000 0.000000000000 +chr1 19290000 19291000 Tfap2d 472.0 197000 0.000000000000 0.664789163653 0.000000000000 0.000000000000 +chr1 19291000 19292000 Tfap2d 472.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 472.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 472.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/FL-E13-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# FL-E13-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 810.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 810.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 810.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 810.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 810.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 810.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 810.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 810.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 810.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 810.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 810.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 810.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 810.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 810.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 810.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 810.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 4302000 4303000 Sox17 810.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 4303000 4304000 Sox17 810.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 4304000 4305000 Sox17 810.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 4305000 4306000 Sox17 810.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 4306000 4307000 Sox17 810.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4307000 4308000 Sox17 810.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 4308000 4309000 Sox17 810.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 4309000 4310000 Sox17 810.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 4310000 4311000 Sox17 810.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 4311000 4312000 Sox17 810.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 4312000 4313000 Sox17 810.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 4313000 4314000 Sox17 810.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 4314000 4315000 Sox17 810.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 4315000 4316000 Sox17 810.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 4316000 4317000 Sox17 810.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 4317000 4318000 Sox17 810.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 4318000 4319000 Sox17 810.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 4319000 4320000 Sox17 810.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 4320000 4321000 Sox17 810.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 4321000 4322000 Sox17 810.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 4322000 4323000 Sox17 810.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 4323000 4324000 Sox17 810.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 4324000 4325000 Sox17 810.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 4325000 4326000 Sox17 810.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 4326000 4327000 Sox17 810.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 4327000 4328000 Sox17 810.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 4328000 4329000 Sox17 810.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 4329000 4330000 Sox17 810.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 4330000 4331000 Sox17 810.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 4331000 4332000 Sox17 810.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 4332000 4333000 Sox17 810.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 4333000 4334000 Sox17 810.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 4334000 4335000 Sox17 810.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 4335000 4336000 Sox17 810.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 4336000 4337000 Sox17 810.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 4337000 4338000 Sox17 810.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 4338000 4339000 Sox17 810.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 4339000 4340000 Sox17 810.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 4340000 4341000 Sox17 810.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 4341000 4342000 Sox17 810.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 4342000 4343000 Sox17 810.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 4343000 4344000 Sox17 810.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 4344000 4345000 Sox17 810.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 4345000 4346000 Sox17 810.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 4346000 4347000 Sox17 810.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 4347000 4348000 Sox17 810.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 4348000 4349000 Sox17 810.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 4349000 4350000 Sox17 810.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 4350000 4351000 Sox17 810.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 4351000 4352000 Sox17 810.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 4352000 4353000 Sox17 810.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 4353000 4354000 Sox17 810.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 4354000 4355000 Sox17 810.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 4355000 4356000 Sox17 810.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 4356000 4357000 Sox17 810.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 4357000 4358000 Sox17 810.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 4358000 4359000 Sox17 810.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 4359000 4360000 Sox17 810.0 -128000 0.000000000000 0.809423175635 0.000000000000 0.000000000000 +chr1 4360000 4361000 Sox17 810.0 -127000 0.000000000000 0.785743936517 0.000000000000 0.000000000000 +chr1 4361000 4362000 Sox17 810.0 -126000 0.000000000000 0.776169873709 0.000000000000 0.000000000000 +chr1 4362000 4363000 Sox17 810.0 -125000 0.000000000000 0.789042220648 0.000000000000 0.000000000000 +chr1 4363000 4364000 Sox17 810.0 -124000 0.000000000000 0.798137256530 0.000000000000 0.000000000000 +chr1 4364000 4365000 Sox17 810.0 -123000 0.000000000000 0.785510253584 0.000000000000 0.000000000000 +chr1 4365000 4366000 Sox17 810.0 -122000 0.000000000000 0.799644194656 0.000000000000 0.000000000000 +chr1 4366000 4367000 Sox17 810.0 -121000 0.000000000000 0.790961581141 0.000000000000 0.000000000000 +chr1 4367000 4368000 Sox17 810.0 -120000 0.000000000000 0.784452828684 0.000000000000 0.000000000000 +chr1 4368000 4369000 Sox17 810.0 -119000 0.000000000000 0.790335392224 0.000000000000 0.000000000000 +chr1 4369000 4370000 Sox17 810.0 -118000 0.000000000000 0.792616868707 0.000000000000 0.000000000000 +chr1 4370000 4371000 Sox17 810.0 -117000 0.000000000000 0.774846873828 0.000000000000 0.000000000000 +chr1 4371000 4372000 Sox17 810.0 -116000 0.000000000000 0.765795808398 0.000000000000 0.000000000000 +chr1 4372000 4373000 Sox17 810.0 -115000 0.000000000000 0.757379810911 0.000000000000 0.000000000000 +chr1 4373000 4374000 Sox17 810.0 -114000 0.000000000000 0.773895809279 0.000000000000 0.000000000000 +chr1 4374000 4375000 Sox17 810.0 -113000 0.000000000000 0.780251801078 0.000000000000 0.000000000000 +chr1 4375000 4376000 Sox17 810.0 -112000 0.000000000000 0.809192563048 0.000000000000 0.000000000000 +chr1 4376000 4377000 Sox17 810.0 -111000 0.000000000000 0.805959066383 0.000000000000 0.000000000000 +chr1 4377000 4378000 Sox17 810.0 -110000 0.000000000000 0.826154588365 0.000000000000 0.000000000000 +chr1 4378000 4379000 Sox17 810.0 -109000 0.000000000000 0.796608508060 0.000000000000 0.000000000000 +chr1 4379000 4380000 Sox17 810.0 -108000 0.000000000000 0.785369993572 0.000000000000 0.000000000000 +chr1 4380000 4381000 Sox17 810.0 -107000 0.000000000000 0.763585636187 0.000000000000 0.000000000000 +chr1 4381000 4382000 Sox17 810.0 -106000 0.000000000000 0.796206503792 0.000000000000 0.000000000000 +chr1 4382000 4383000 Sox17 810.0 -105000 0.000000000000 0.801881199084 0.000000000000 0.000000000000 +chr1 4383000 4384000 Sox17 810.0 -104000 0.000000000000 0.830453698245 0.000000000000 0.000000000000 +chr1 4384000 4385000 Sox17 810.0 -103000 0.000000000000 0.843960603767 0.000000000000 0.000000000000 +chr1 4385000 4386000 Sox17 810.0 -102000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 4386000 4387000 Sox17 810.0 -101000 0.000000000000 0.853858772997 0.000000000000 0.000000000000 +chr1 4387000 4388000 Sox17 810.0 -100000 0.000000000000 0.828442819541 0.000000000000 0.000000000000 +chr1 4388000 4389000 Sox17 810.0 -99000 0.000000000000 0.815159530773 0.000000000000 0.000000000000 +chr1 4389000 4390000 Sox17 810.0 -98000 0.000000000000 0.803890742201 0.000000000000 0.000000000000 +chr1 4390000 4391000 Sox17 810.0 -97000 0.000000000000 0.793812954579 0.000000000000 0.000000000000 +chr1 4391000 4392000 Sox17 810.0 -96000 0.000000000000 0.776513211062 0.000000000000 0.000000000000 +chr1 4392000 4393000 Sox17 810.0 -95000 0.000000000000 0.769795672212 0.000000000000 0.000000000000 +chr1 4393000 4394000 Sox17 810.0 -94000 0.000000000000 0.745179566394 0.000000000000 0.000000000000 +chr1 4394000 4395000 Sox17 810.0 -93000 0.000000000000 0.740519396446 0.000000000000 0.000000000000 +chr1 4395000 4396000 Sox17 810.0 -92000 0.000000000000 0.723302632894 0.000000000000 0.000000000000 +chr1 4396000 4397000 Sox17 810.0 -91000 0.000000000000 0.723801019412 0.000000000000 0.000000000000 +chr1 4397000 4398000 Sox17 810.0 -90000 0.000000000000 0.727642253997 0.000000000000 0.000000000000 +chr1 4398000 4399000 Sox17 810.0 -89000 0.000000000000 0.754315244689 0.000000000000 0.000000000000 +chr1 4399000 4400000 Sox17 810.0 -88000 0.000000000000 0.748521601906 0.000000000000 0.000000000000 +chr1 4400000 4401000 Sox17 810.0 -87000 0.000000000000 0.773106724449 0.000000000000 0.000000000000 +chr1 4401000 4402000 Sox17 810.0 -86000 0.000000000000 0.763860606499 0.000000000000 0.000000000000 +chr1 4402000 4403000 Sox17 810.0 -85000 0.000000000000 0.758432715512 0.000000000000 0.000000000000 +chr1 4403000 4404000 Sox17 810.0 -84000 0.000000000000 0.763116447672 0.000000000000 0.000000000000 +chr1 4404000 4405000 Sox17 810.0 -83000 0.000000000000 0.774521391995 0.000000000000 0.000000000000 +chr1 4405000 4406000 Sox17 810.0 -82000 0.000000000000 0.783854637009 0.000000000000 0.000000000000 +chr1 4406000 4407000 Sox17 810.0 -81000 0.000000000000 0.804191983653 0.000000000000 0.000000000000 +chr1 4407000 4408000 Sox17 810.0 -80000 0.000000000000 0.820453383054 0.000000000000 0.000000000000 +chr1 4408000 4409000 Sox17 810.0 -79000 0.000000000000 0.787759592071 0.000000000000 0.000000000000 +chr1 4409000 4410000 Sox17 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0.780823956737 0.600000000000 +chr1 4628000 4629000 Sox17 810.0 141000 0.000493827160 0.604143773708 0.561411536910 0.400000000000 +chr1 4629000 4630000 Sox17 810.0 142000 0.000493827160 0.632888736121 0.627838092596 0.400000000000 +chr1 4630000 4631000 Sox17 810.0 143000 0.000493827160 0.631972051038 0.598158473458 0.400000000000 +chr1 4631000 4632000 Sox17 810.0 144000 0.000493827160 0.630242651353 0.679725537759 0.400000000000 +chr1 4632000 4633000 Sox17 810.0 145000 0.000493827160 0.654163481416 0.822467901876 0.400000000000 +chr1 4633000 4634000 Sox17 810.0 146000 0.000493827160 0.637809455886 0.758034932111 0.400000000000 +chr1 4634000 4635000 Sox17 810.0 147000 0.000000000000 0.621469775934 0.000000000000 0.000000000000 +chr1 4635000 4636000 Sox17 810.0 148000 0.000246913580 0.608829914540 0.373849046024 0.200000000000 +chr1 4636000 4637000 Sox17 810.0 149000 0.000246913580 0.611099504790 0.384330795060 0.200000000000 +chr1 4637000 4638000 Sox17 810.0 150000 0.000246913580 0.594707930687 0.357594739558 0.200000000000 +chr1 4638000 4639000 Sox17 810.0 151000 0.000246913580 0.605065312757 0.377278853812 0.200000000000 +chr1 4639000 4640000 Sox17 810.0 152000 0.000246913580 0.593714719997 0.365541289385 0.200000000000 +chr1 4640000 4641000 Sox17 810.0 153000 0.000000000000 0.596420485199 0.000000000000 0.000000000000 +chr1 4641000 4642000 Sox17 810.0 154000 0.000246913580 0.606160024614 0.375556119307 0.200000000000 +chr1 4642000 4643000 Sox17 810.0 155000 0.000246913580 0.609612095406 0.363923850039 0.200000000000 +chr1 4643000 4644000 Sox17 810.0 156000 0.000246913580 0.613314445827 0.363923850039 0.200000000000 +chr1 4644000 4645000 Sox17 810.0 157000 0.000246913580 0.602751520183 0.341272987847 0.200000000000 +chr1 4645000 4646000 Sox17 810.0 158000 0.000246913580 0.585293824856 0.328987160641 0.200000000000 +chr1 4646000 4647000 Sox17 810.0 159000 0.000246913580 0.573814787091 0.320026420787 0.200000000000 +chr1 4647000 4648000 Sox17 810.0 160000 0.000246913580 0.559100492248 0.315121801274 0.200000000000 +chr1 4648000 4649000 Sox17 810.0 161000 0.000493827160 0.533506885425 0.593839639683 0.400000000000 +chr1 4649000 4650000 Sox17 810.0 162000 0.000493827160 0.591476571829 0.671402368765 0.400000000000 +chr1 4650000 4651000 Sox17 810.0 163000 0.000493827160 0.593731273297 0.682545975694 0.400000000000 +chr1 4651000 4652000 Sox17 810.0 164000 0.000493827160 0.604924746422 0.712093420742 0.400000000000 +chr1 4652000 4653000 Sox17 810.0 165000 0.000987654321 0.620870359018 1.516069864221 0.800000000000 +chr1 4653000 4654000 Sox17 810.0 166000 0.000987654321 0.653063136379 1.644935803753 0.800000000000 +chr1 4654000 4655000 Sox17 810.0 167000 0.000987654321 0.616215444951 1.574101247046 0.800000000000 +chr1 4655000 4656000 Sox17 810.0 168000 0.001481481481 0.383862623411 2.295259259717 1.200000000000 +chr1 4656000 4657000 Sox17 810.0 169000 0.001728395062 0.399152078371 2.419023237597 1.400000000000 +chr1 4657000 4658000 Sox17 810.0 170000 0.001234567901 0.414341970499 1.671682727052 1.000000000000 +chr1 4658000 4659000 Sox17 810.0 171000 0.000987654321 0.601961893812 1.353856628464 0.800000000000 +chr1 4659000 4660000 Sox17 810.0 172000 0.000987654321 0.591031149544 1.270220697103 0.800000000000 +chr1 4660000 4661000 Sox17 810.0 173000 0.000493827160 0.574110012150 0.647612520865 0.400000000000 +chr1 4661000 4662000 Sox17 810.0 174000 0.000246913580 0.594064541193 0.342694958640 0.200000000000 +chr1 4662000 4663000 Sox17 810.0 175000 0.000246913580 0.586742846341 0.354512026264 0.200000000000 +chr1 4663000 4664000 Sox17 810.0 176000 0.000246913580 0.580281241496 0.349986340790 0.200000000000 +chr1 4664000 4665000 Sox17 810.0 177000 0.000246913580 0.600664600573 0.373849046024 0.200000000000 +chr1 4665000 4666000 Sox17 810.0 178000 0.000493827160 0.611923543314 0.775913114612 0.400000000000 +chr1 4666000 4667000 Sox17 810.0 179000 0.000246913580 0.616982108456 0.395417260391 0.200000000000 +chr1 4667000 4668000 Sox17 810.0 180000 0.000246913580 0.632990312064 0.417496396239 0.200000000000 +chr1 4668000 4669000 Sox17 810.0 181000 0.000246913580 0.637219432588 0.419626479907 0.200000000000 +chr1 4669000 4670000 Sox17 810.0 182000 0.000246913580 0.649572741436 0.442187043505 0.200000000000 +chr1 4670000 4671000 Sox17 810.0 183000 0.000000000000 0.640768493097 0.000000000000 0.000000000000 +chr1 4671000 4672000 Sox17 810.0 184000 0.000246913580 0.624583606023 0.401203854492 0.200000000000 +chr1 4672000 4673000 Sox17 810.0 185000 0.000246913580 0.617559413959 0.395417260391 0.200000000000 +chr1 4673000 4674000 Sox17 810.0 186000 0.000246913580 0.647906480781 0.437482925987 0.200000000000 +chr1 4674000 4675000 Sox17 810.0 187000 0.000246913580 0.651241359569 0.444577243757 0.200000000000 +chr1 4675000 4676000 Sox17 810.0 188000 0.000493827160 0.647869186187 0.879644813784 0.400000000000 +chr1 4676000 4677000 Sox17 810.0 189000 0.000246913580 0.671654971880 0.478179012441 0.200000000000 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0.250000000000 +chr1 4687000 4688000 Sox17 810.0 200000 0.000411522634 0.637624930855 0.699377466512 0.333333333333
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_14300280_14300280_Eya1.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# MB-E10-5_chr1.cool chr1_14300280_14300280 14.10 Mbp 14.50 Mbp Eya1 Sum of interactions in fixate range: 832.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 14100000 14101000 Eya1 832.0 -200000 0.000400641026 0.880044890460 2.426424093120 0.333333333333 +chr1 14101000 14102000 Eya1 832.0 -199000 0.000300480769 0.852151439574 1.429857059822 0.250000000000 +chr1 14102000 14103000 Eya1 832.0 -198000 0.000240384615 0.820756603944 0.931069711724 0.200000000000 +chr1 14103000 14104000 Eya1 832.0 -197000 0.000240384615 0.814190727178 0.889688835341 0.200000000000 +chr1 14104000 14105000 Eya1 832.0 -196000 0.000240384615 0.827190062074 0.976487746811 0.200000000000 +chr1 14105000 14106000 Eya1 832.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 14106000 14107000 Eya1 832.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 14107000 14108000 Eya1 832.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 14108000 14109000 Eya1 832.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 14109000 14110000 Eya1 832.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 14110000 14111000 Eya1 832.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 14111000 14112000 Eya1 832.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 14112000 14113000 Eya1 832.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 14113000 14114000 Eya1 832.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 14114000 14115000 Eya1 832.0 -186000 0.000000000000 0.853953368554 0.000000000000 0.000000000000 +chr1 14115000 14116000 Eya1 832.0 -185000 0.000000000000 0.849507893763 0.000000000000 0.000000000000 +chr1 14116000 14117000 Eya1 832.0 -184000 0.000000000000 0.846001342365 0.000000000000 0.000000000000 +chr1 14117000 14118000 Eya1 832.0 -183000 0.000000000000 0.875951792135 0.000000000000 0.000000000000 +chr1 14118000 14119000 Eya1 832.0 -182000 0.000000000000 0.882361637509 0.000000000000 0.000000000000 +chr1 14119000 14120000 Eya1 832.0 -181000 0.000000000000 1.000000000000 0.000000000000 0.000000000000 +chr1 14120000 14121000 Eya1 832.0 -180000 0.000000000000 0.859844304863 0.000000000000 0.000000000000 +chr1 14121000 14122000 Eya1 832.0 -179000 0.000000000000 0.878506000461 0.000000000000 0.000000000000 +chr1 14122000 14123000 Eya1 832.0 -178000 0.000000000000 0.873876939682 0.000000000000 0.000000000000 +chr1 14123000 14124000 Eya1 832.0 -177000 0.000000000000 0.861822188997 0.000000000000 0.000000000000 +chr1 14124000 14125000 Eya1 832.0 -176000 0.000000000000 0.863859548467 0.000000000000 0.000000000000 +chr1 14125000 14126000 Eya1 832.0 -175000 0.000000000000 0.880027314411 0.000000000000 0.000000000000 +chr1 14126000 14127000 Eya1 832.0 -174000 0.000000000000 0.879993062257 0.000000000000 0.000000000000 +chr1 14127000 14128000 Eya1 832.0 -173000 0.000000000000 0.875972132345 0.000000000000 0.000000000000 +chr1 14128000 14129000 Eya1 832.0 -172000 0.000000000000 0.869989217721 0.000000000000 0.000000000000 +chr1 14129000 14130000 Eya1 832.0 -171000 0.000000000000 0.882140840596 0.000000000000 0.000000000000 +chr1 14130000 14131000 Eya1 832.0 -170000 0.000000000000 0.859915954096 0.000000000000 0.000000000000 +chr1 14131000 14132000 Eya1 832.0 -169000 0.000000000000 0.852922494459 0.000000000000 0.000000000000 +chr1 14132000 14133000 Eya1 832.0 -168000 0.000000000000 0.858077240772 0.000000000000 0.000000000000 +chr1 14133000 14134000 Eya1 832.0 -167000 0.000000000000 0.859961156614 0.000000000000 0.000000000000 +chr1 14134000 14135000 Eya1 832.0 -166000 0.000000000000 0.839443928609 0.000000000000 0.000000000000 +chr1 14135000 14136000 Eya1 832.0 -165000 0.000000000000 0.847952610367 0.000000000000 0.000000000000 +chr1 14136000 14137000 Eya1 832.0 -164000 0.000000000000 0.836274856237 0.000000000000 0.000000000000 +chr1 14137000 14138000 Eya1 832.0 -163000 0.000000000000 0.845483826208 0.000000000000 0.000000000000 +chr1 14138000 14139000 Eya1 832.0 -162000 0.000000000000 0.861960554221 0.000000000000 0.000000000000 +chr1 14139000 14140000 Eya1 832.0 -161000 0.000000000000 0.857241565900 0.000000000000 0.000000000000 +chr1 14140000 14141000 Eya1 832.0 -160000 0.000000000000 0.849999946243 0.000000000000 0.000000000000 +chr1 14141000 14142000 Eya1 832.0 -159000 0.000000000000 0.869107683649 0.000000000000 0.000000000000 +chr1 14142000 14143000 Eya1 832.0 -158000 0.000000000000 0.851329217290 0.000000000000 0.000000000000 +chr1 14143000 14144000 Eya1 832.0 -157000 0.000000000000 0.855727455775 0.000000000000 0.000000000000 +chr1 14144000 14145000 Eya1 832.0 -156000 0.000000000000 0.873934387705 0.000000000000 0.000000000000 +chr1 14145000 14146000 Eya1 832.0 -155000 0.000000000000 0.859847349960 0.000000000000 0.000000000000 +chr1 14146000 14147000 Eya1 832.0 -154000 0.000000000000 0.857618556328 0.000000000000 0.000000000000 +chr1 14147000 14148000 Eya1 832.0 -153000 0.000000000000 0.859847403732 0.000000000000 0.000000000000 +chr1 14148000 14149000 Eya1 832.0 -152000 0.000000000000 0.855857675357 0.000000000000 0.000000000000 +chr1 14149000 14150000 Eya1 832.0 -151000 0.000000000000 0.856543738658 0.000000000000 0.000000000000 +chr1 14150000 14151000 Eya1 832.0 -150000 0.000000000000 0.865569156744 0.000000000000 0.000000000000 +chr1 14151000 14152000 Eya1 832.0 -149000 0.000000000000 0.846389774433 0.000000000000 0.000000000000 +chr1 14152000 14153000 Eya1 832.0 -148000 0.000000000000 0.855879556310 0.000000000000 0.000000000000 +chr1 14153000 14154000 Eya1 832.0 -147000 0.000000000000 0.855607168087 0.000000000000 0.000000000000 +chr1 14154000 14155000 Eya1 832.0 -146000 0.000000000000 0.857929743692 0.000000000000 0.000000000000 +chr1 14155000 14156000 Eya1 832.0 -145000 0.000000000000 0.812820240537 0.000000000000 0.000000000000 +chr1 14156000 14157000 Eya1 832.0 -144000 0.000000000000 0.817764918022 0.000000000000 0.000000000000 +chr1 14157000 14158000 Eya1 832.0 -143000 0.000000000000 0.809559971554 0.000000000000 0.000000000000 +chr1 14158000 14159000 Eya1 832.0 -142000 0.000000000000 0.792741329979 0.000000000000 0.000000000000 +chr1 14159000 14160000 Eya1 832.0 -141000 0.000000000000 0.793159964595 0.000000000000 0.000000000000 +chr1 14160000 14161000 Eya1 832.0 -140000 0.000000000000 0.814898228645 0.000000000000 0.000000000000 +chr1 14161000 14162000 Eya1 832.0 -139000 0.000000000000 0.793256085428 0.000000000000 0.000000000000 +chr1 14162000 14163000 Eya1 832.0 -138000 0.000000000000 0.796561943654 0.000000000000 0.000000000000 +chr1 14163000 14164000 Eya1 832.0 -137000 0.000000000000 0.813067096068 0.000000000000 0.000000000000 +chr1 14164000 14165000 Eya1 832.0 -136000 0.000000000000 0.799009127671 0.000000000000 0.000000000000 +chr1 14165000 14166000 Eya1 832.0 -135000 0.000000000000 0.795351550130 0.000000000000 0.000000000000 +chr1 14166000 14167000 Eya1 832.0 -134000 0.000000000000 0.793708590652 0.000000000000 0.000000000000 +chr1 14167000 14168000 Eya1 832.0 -133000 0.000000000000 0.776324965475 0.000000000000 0.000000000000 +chr1 14168000 14169000 Eya1 832.0 -132000 0.000000000000 0.775989717741 0.000000000000 0.000000000000 +chr1 14169000 14170000 Eya1 832.0 -131000 0.000000000000 0.790939191609 0.000000000000 0.000000000000 +chr1 14170000 14171000 Eya1 832.0 -130000 0.000000000000 0.791646322700 0.000000000000 0.000000000000 +chr1 14171000 14172000 Eya1 832.0 -129000 0.000000000000 0.794709404699 0.000000000000 0.000000000000 +chr1 14172000 14173000 Eya1 832.0 -128000 0.000000000000 0.809423175635 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14369000 Eya1 832.0 68000 0.001201923077 0.547265021096 0.998403930008 1.000000000000 +chr1 14369000 14370000 Eya1 832.0 69000 0.000961538462 0.465980642540 0.790834520303 0.800000000000 +chr1 14370000 14371000 Eya1 832.0 70000 0.000721153846 0.444796187147 0.581636768784 0.600000000000 +chr1 14371000 14372000 Eya1 832.0 71000 0.000480769231 0.428059180779 0.375044474064 0.400000000000 +chr1 14372000 14373000 Eya1 832.0 72000 0.000480769231 0.412214629831 0.383119594078 0.400000000000 +chr1 14373000 14374000 Eya1 832.0 73000 0.000480769231 0.409759647919 0.396396015753 0.400000000000 +chr1 14374000 14375000 Eya1 832.0 74000 0.000480769231 0.393442654531 0.381295215348 0.400000000000 +chr1 14375000 14376000 Eya1 832.0 75000 0.000480769231 0.408748776277 0.371563782862 0.400000000000 +chr1 14376000 14377000 Eya1 832.0 76000 0.000480769231 0.414669054354 0.368995369597 0.400000000000 +chr1 14377000 14378000 Eya1 832.0 77000 0.000480769231 0.420440038855 0.357464264211 0.400000000000 +chr1 14378000 14379000 Eya1 832.0 78000 0.000480769231 0.423235388129 0.393474177778 0.400000000000 +chr1 14379000 14380000 Eya1 832.0 79000 0.000961538462 0.424768297386 0.798723144006 0.800000000000 +chr1 14380000 14381000 Eya1 832.0 80000 0.000721153846 0.458578421689 0.630488151323 0.600000000000 +chr1 14381000 14382000 Eya1 832.0 81000 0.000721153846 0.452159184220 0.614363134542 0.600000000000 +chr1 14382000 14383000 Eya1 832.0 82000 0.001442307692 0.531662545053 1.241426282299 1.200000000000 +chr1 14383000 14384000 Eya1 832.0 83000 0.001201923077 0.544539152402 0.905791800808 1.000000000000 +chr1 14384000 14385000 Eya1 832.0 84000 0.000721153846 0.431883914707 0.511097841780 0.600000000000 +chr1 14385000 14386000 Eya1 832.0 85000 0.000961538462 0.408620507080 0.680016944466 0.800000000000 +chr1 14386000 14387000 Eya1 832.0 86000 0.001682692308 0.578356261020 1.306536052373 1.400000000000 +chr1 14387000 14388000 Eya1 832.0 87000 0.000961538462 0.383191453565 0.711751068273 0.800000000000 +chr1 14388000 14389000 Eya1 832.0 88000 0.000961538462 0.391467791454 0.707037485005 0.800000000000 +chr1 14389000 14390000 Eya1 832.0 89000 0.001201923077 0.597641299244 0.976487746018 1.000000000000 +chr1 14390000 14391000 Eya1 832.0 90000 0.001201923077 0.577027626513 0.983685444445 1.000000000000 +chr1 14391000 14392000 Eya1 832.0 91000 0.000721153846 0.415388228662 0.566547135970 0.600000000000 +chr1 14392000 14393000 Eya1 832.0 92000 0.000721153846 0.457521466073 0.635492025580 0.600000000000 +chr1 14393000 14394000 Eya1 832.0 93000 0.000961538462 0.481878108523 0.879912034881 0.800000000000 +chr1 14394000 14395000 Eya1 832.0 94000 0.000961538462 0.485654072445 0.806770732420 0.800000000000 +chr1 14395000 14396000 Eya1 832.0 95000 0.000721153846 0.470520014646 0.580231849042 0.600000000000 +chr1 14396000 14397000 Eya1 832.0 96000 0.000721153846 0.451356425790 0.563887290240 0.600000000000 +chr1 14397000 14398000 Eya1 832.0 97000 0.000721153846 0.458000704387 0.584467118044 0.600000000000 +chr1 14398000 14399000 Eya1 832.0 98000 0.000480769231 0.454705613751 0.380389525993 0.400000000000 +chr1 14399000 14400000 Eya1 832.0 99000 0.000240384615 0.466062200428 0.204265293878 0.200000000000 +chr1 14400000 14401000 Eya1 832.0 100000 0.000721153846 0.485559847885 0.684376027315 0.600000000000 +chr1 14401000 14402000 Eya1 832.0 101000 0.000480769231 0.476647654186 0.488243872910 0.400000000000 +chr1 14402000 14403000 Eya1 832.0 102000 0.000721153846 0.458905220217 0.712807079120 0.600000000000 +chr1 14403000 14404000 Eya1 832.0 103000 0.000721153846 0.494251471435 0.787593395411 0.600000000000 +chr1 14404000 14405000 Eya1 832.0 104000 0.000961538462 0.496762683299 1.000899939643 0.800000000000 +chr1 14405000 14406000 Eya1 832.0 105000 0.000961538462 0.490944103656 0.958946050621 0.800000000000 +chr1 14406000 14407000 Eya1 832.0 106000 0.001201923077 0.494608472741 1.170643204852 1.000000000000 +chr1 14407000 14408000 Eya1 832.0 107000 0.000961538462 0.500850258886 0.899685339184 0.800000000000 +chr1 14408000 14409000 Eya1 832.0 108000 0.001201923077 0.503477555567 1.096876646200 1.000000000000 +chr1 14409000 14410000 Eya1 832.0 109000 0.000961538462 0.499669178563 0.909909036298 0.800000000000 +chr1 14410000 14411000 Eya1 832.0 110000 0.000480769231 0.503445250814 0.471011736562 0.400000000000 +chr1 14411000 14412000 Eya1 832.0 111000 0.000480769231 0.472832134979 0.446083538620 0.400000000000 +chr1 14412000 14413000 Eya1 832.0 112000 0.000480769231 0.479967223270 0.457554258272 0.400000000000 +chr1 14413000 14414000 Eya1 832.0 113000 0.000240384615 0.490923249210 0.234815235231 0.200000000000 +chr1 14414000 14415000 Eya1 832.0 114000 0.000480769231 0.453380733495 0.462843902917 0.400000000000 +chr1 14415000 14416000 Eya1 832.0 115000 0.000480769231 0.469666167625 0.466892100350 0.400000000000 +chr1 14416000 14417000 Eya1 832.0 116000 0.000240384615 0.505935664500 0.268697970519 0.200000000000 +chr1 14417000 14418000 Eya1 832.0 117000 0.000240384615 0.523376482067 0.274219161738 0.200000000000 +chr1 14418000 14419000 Eya1 832.0 118000 0.000480769231 0.529451256365 0.556055522474 0.400000000000 +chr1 14419000 14420000 Eya1 832.0 119000 0.000240384615 0.533356831096 0.271430492274 0.200000000000 +chr1 14420000 14421000 Eya1 832.0 120000 0.000480769231 0.516584121708 0.535598630183 0.400000000000 +chr1 14421000 14422000 Eya1 832.0 121000 0.000480769231 0.535771528777 0.526789442119 0.400000000000 +chr1 14422000 14423000 Eya1 832.0 122000 0.000480769231 0.530490537983 0.541026994721 0.400000000000 +chr1 14423000 14424000 Eya1 832.0 123000 0.000240384615 0.530562527645 0.276110328386 0.200000000000 +chr1 14424000 14425000 Eya1 832.0 124000 0.000480769231 0.545553903451 0.586608023254 0.400000000000 +chr1 14425000 14426000 Eya1 832.0 125000 0.000240384615 0.564891705893 0.320287980913 0.200000000000 +chr1 14426000 14427000 Eya1 832.0 126000 0.001682692308 0.459648553557 2.091432710060 1.400000000000 +chr1 14427000 14428000 Eya1 832.0 127000 0.001923076923 0.455089832644 2.444946418284 1.600000000000 +chr1 14428000 14429000 Eya1 832.0 128000 0.001923076923 0.440214033666 2.562303847300 1.600000000000 +chr1 14429000 14430000 Eya1 832.0 129000 0.001682692308 0.449296940099 2.164107978537 1.400000000000 +chr1 14430000 14431000 Eya1 832.0 130000 0.002403846154 0.144092517424 2.890685746055 2.000000000000 +chr1 14431000 14432000 Eya1 832.0 131000 0.001201923077 0.438180156291 1.570039121874 1.000000000000 +chr1 14432000 14433000 Eya1 832.0 132000 0.000961538462 0.585853557394 1.286297112140 0.800000000000 +chr1 14433000 14434000 Eya1 832.0 133000 0.000961538462 0.595436468036 1.160463698084 0.800000000000 +chr1 14434000 14435000 Eya1 832.0 134000 0.001442307692 0.396906108679 1.812950834534 1.200000000000 +chr1 14435000 14436000 Eya1 832.0 135000 0.000721153846 0.604088556070 0.949470299058 0.600000000000 +chr1 14436000 14437000 Eya1 832.0 136000 0.000480769231 0.588739365234 0.580231849042 0.400000000000 +chr1 14437000 14438000 Eya1 832.0 137000 0.000480769231 0.567698248117 0.541026994721 0.400000000000 +chr1 14438000 14439000 Eya1 832.0 138000 0.000480769231 0.545110967143 0.602045076614 0.400000000000 +chr1 14439000 14440000 Eya1 832.0 139000 0.000000000000 0.585442994010 0.000000000000 0.000000000000 +chr1 14440000 14441000 Eya1 832.0 140000 0.000000000000 0.584686184662 0.000000000000 0.000000000000 +chr1 14441000 14442000 Eya1 832.0 141000 0.000000000000 0.604143773708 0.000000000000 0.000000000000 +chr1 14442000 14443000 Eya1 832.0 142000 0.000000000000 0.632888736121 0.000000000000 0.000000000000 +chr1 14443000 14444000 Eya1 832.0 143000 0.000000000000 0.631972051038 0.000000000000 0.000000000000 +chr1 14444000 14445000 Eya1 832.0 144000 0.000240384615 0.630242651353 0.330876012971 0.200000000000 +chr1 14445000 14446000 Eya1 832.0 145000 0.000961538462 0.654163481416 1.601439905096 0.800000000000 +chr1 14446000 14447000 Eya1 832.0 146000 0.000961538462 0.637809455886 1.475981478388 0.800000000000 +chr1 14447000 14448000 Eya1 832.0 147000 0.001442307692 0.378530224066 2.107157767708 1.200000000000 +chr1 14448000 14449000 Eya1 832.0 148000 0.001682692308 0.391170085460 2.547745301633 1.400000000000 +chr1 14449000 14450000 Eya1 832.0 149000 0.002163461538 0.388900495210 3.367513817293 1.800000000000 +chr1 14450000 14451000 Eya1 832.0 150000 0.002163461538 0.405292069313 3.133251984828 1.800000000000 +chr1 14451000 14452000 Eya1 832.0 151000 0.002163461538 0.394934687243 3.305724572467 1.800000000000 +chr1 14452000 14453000 Eya1 832.0 152000 0.002163461538 0.406285280003 3.202879807229 1.800000000000 +chr1 14453000 14454000 Eya1 832.0 153000 0.001923076923 0.403579514801 2.872537943893 1.600000000000 +chr1 14454000 14455000 Eya1 832.0 154000 0.001201923077 0.393839975386 1.828127744223 1.000000000000 +chr1 14455000 14456000 Eya1 832.0 155000 0.000480769231 0.609612095406 0.708601727240 0.400000000000 +chr1 14456000 14457000 Eya1 832.0 156000 0.000721153846 0.613314445827 1.062902590860 0.600000000000 +chr1 14457000 14458000 Eya1 832.0 157000 0.000240384615 0.602751520183 0.332248942495 0.200000000000 +chr1 14458000 14459000 Eya1 832.0 158000 0.000721153846 0.585293824856 0.960863942738 0.600000000000 +chr1 14459000 14460000 Eya1 832.0 159000 0.000721153846 0.573814787091 0.934692551098 0.600000000000 +chr1 14460000 14461000 Eya1 832.0 160000 0.001682692308 0.440899507752 2.147524775510 1.400000000000 +chr1 14461000 14462000 Eya1 832.0 161000 0.001923076923 0.466493114575 2.312548596844 1.600000000000 +chr1 14462000 14463000 Eya1 832.0 162000 0.002163461538 0.408523428171 2.941420233350 1.800000000000 +chr1 14463000 14464000 Eya1 832.0 163000 0.001682692308 0.406268726703 2.325742597467 1.400000000000 +chr1 14464000 14465000 Eya1 832.0 164000 0.001682692308 0.395075253578 2.426424095919 1.400000000000 +chr1 14465000 14466000 Eya1 832.0 165000 0.000721153846 0.620870359018 1.106986108791 0.600000000000 +chr1 14466000 14467000 Eya1 832.0 166000 0.000240384615 0.653063136379 0.400359976274 0.200000000000 +chr1 14467000 14468000 Eya1 832.0 167000 0.000000000000 0.616215444951 0.000000000000 0.000000000000 +chr1 14468000 14469000 Eya1 832.0 168000 0.000000000000 0.616137376589 0.000000000000 0.000000000000 +chr1 14469000 14470000 Eya1 832.0 169000 0.000000000000 0.600847921629 0.000000000000 0.000000000000 +chr1 14470000 14471000 Eya1 832.0 170000 0.000000000000 0.585658029501 0.000000000000 0.000000000000 +chr1 14471000 14472000 Eya1 832.0 171000 0.000480769231 0.601961893812 0.659028767461 0.400000000000 +chr1 14472000 14473000 Eya1 832.0 172000 0.000480769231 0.591031149544 0.618316565296 0.400000000000 +chr1 14473000 14474000 Eya1 832.0 173000 0.000480769231 0.574110012150 0.630488151323 0.400000000000 +chr1 14474000 14475000 Eya1 832.0 174000 0.000480769231 0.594064541193 0.667266626197 0.400000000000 +chr1 14475000 14476000 Eya1 832.0 175000 0.000480769231 0.586742846341 0.690275820369 0.400000000000 +chr1 14476000 14477000 Eya1 832.0 176000 0.000240384615 0.580281241496 0.340731894279 0.200000000000 +chr1 14477000 14478000 Eya1 832.0 177000 0.000480769231 0.600664600573 0.727927229038 0.400000000000 +chr1 14478000 14479000 Eya1 832.0 178000 0.000480769231 0.611923543314 0.755396181293 0.400000000000 +chr1 14479000 14480000 Eya1 832.0 179000 0.000480769231 0.616982108456 0.769923031050 0.400000000000 +chr1 14480000 14481000 Eya1 832.0 180000 0.000480769231 0.632990312064 0.812913656138 0.400000000000 +chr1 14481000 14482000 Eya1 832.0 181000 0.000240384615 0.637219432588 0.408530587410 0.200000000000 +chr1 14482000 14483000 Eya1 832.0 182000 0.000000000000 0.649572741436 0.000000000000 0.000000000000 +chr1 14483000 14484000 Eya1 832.0 183000 0.000000000000 0.640768493097 0.000000000000 0.000000000000 +chr1 14484000 14485000 Eya1 832.0 184000 0.000240384615 0.624583606023 0.390595098725 0.200000000000 +chr1 14485000 14486000 Eya1 832.0 185000 0.000961538462 0.617559413959 1.539846062099 0.800000000000 +chr1 14486000 14487000 Eya1 832.0 186000 0.000961538462 0.647906480781 1.703659471393 0.800000000000 +chr1 14487000 14488000 Eya1 832.0 187000 0.000961538462 0.651241359569 1.731286381939 0.800000000000 +chr1 14488000 14489000 Eya1 832.0 188000 0.001201923077 0.352130813813 2.140962437394 1.000000000000 +chr1 14489000 14490000 Eya1 832.0 189000 0.001442307692 0.328345028120 2.793209135173 1.200000000000 +chr1 14490000 14491000 Eya1 832.0 190000 0.000721153846 0.671941112135 1.404771845823 0.600000000000 +chr1 14491000 14492000 Eya1 832.0 191000 0.001442307692 0.341250160004 2.669066506024 1.200000000000 +chr1 14492000 14493000 Eya1 832.0 192000 0.002403846154 0.068166431915 4.399560174407 2.000000000000 +chr1 14493000 14494000 Eya1 832.0 193000 0.002163461538 0.323005466215 4.289571172663 1.800000000000 +chr1 14494000 14495000 Eya1 832.0 194000 0.001682692308 0.330674933407 3.239907320421 1.400000000000 +chr1 14495000 14496000 Eya1 832.0 195000 0.002163461538 0.314837109105 4.421153111551 1.800000000000 +chr1 14496000 14497000 Eya1 832.0 196000 0.001682692308 0.314745345249 3.438674642317 1.400000000000 +chr1 14497000 14498000 Eya1 832.0 197000 0.001442307692 0.335210836347 2.729727108893 1.200000000000 +chr1 14498000 14499000 Eya1 832.0 198000 0.002644230769 0.083110512066 4.317607586564 2.200000000000 +chr1 14499000 14500000 Eya1 832.0 199000 0.003305288462 0.073447408129 5.764345200343 2.750000000000 +chr1 14500000 14501000 Eya1 832.0 200000 0.003605769231 1.000000000000 6.127958811148 3.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_19093103_19093103_Tfap2d.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# MB-E10-5_chr1.cool chr1_19093103_19093103 18.89 Mbp 19.29 Mbp Tfap2d Sum of interactions in fixate range: 800.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 18893000 18894000 Tfap2d 800.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 18894000 18895000 Tfap2d 800.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 18895000 18896000 Tfap2d 800.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 18896000 18897000 Tfap2d 800.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 18897000 18898000 Tfap2d 800.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 18898000 18899000 Tfap2d 800.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 18899000 18900000 Tfap2d 800.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 18900000 18901000 Tfap2d 800.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 18901000 18902000 Tfap2d 800.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 18902000 18903000 Tfap2d 800.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 18903000 18904000 Tfap2d 800.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 18904000 18905000 Tfap2d 800.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 18905000 18906000 Tfap2d 800.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 18906000 18907000 Tfap2d 800.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 18907000 18908000 Tfap2d 800.0 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4.200000000000 +chr1 19108000 19109000 Tfap2d 800.0 15000 0.005000000000 0.407768479558 1.075902777761 4.000000000000 +chr1 19109000 19110000 Tfap2d 800.0 16000 0.006250000000 0.296796459030 1.372361156777 5.000000000000 +chr1 19110000 19111000 Tfap2d 800.0 17000 0.005250000000 0.364935193677 1.250015993657 4.200000000000 +chr1 19111000 19112000 Tfap2d 800.0 18000 0.005750000000 0.358191105866 1.409361387122 4.600000000000 +chr1 19112000 19113000 Tfap2d 800.0 19000 0.005000000000 0.348439048335 1.256979245277 4.000000000000 +chr1 19113000 19114000 Tfap2d 800.0 20000 0.005500000000 0.323804711711 1.467986578418 4.400000000000 +chr1 19114000 19115000 Tfap2d 800.0 21000 0.003000000000 0.626925244653 0.823145387262 2.400000000000 +chr1 19115000 19116000 Tfap2d 800.0 22000 0.002500000000 0.623867937782 0.714805793911 2.000000000000 +chr1 19116000 19117000 Tfap2d 800.0 23000 0.001750000000 0.783547557416 0.558891778589 1.400000000000 +chr1 19117000 19118000 Tfap2d 800.0 24000 0.000500000000 0.225115312719 0.162646240224 0.400000000000 +chr1 19118000 19119000 Tfap2d 800.0 25000 0.000000000000 0.221629958422 0.000000000000 0.000000000000 +chr1 19119000 19120000 Tfap2d 800.0 26000 0.000000000000 0.253083049210 0.000000000000 0.000000000000 +chr1 19120000 19121000 Tfap2d 800.0 27000 0.000750000000 0.245782528167 0.294604510589 0.600000000000 +chr1 19121000 19122000 Tfap2d 800.0 28000 0.000750000000 0.257054437971 0.283247874151 0.600000000000 +chr1 19122000 19123000 Tfap2d 800.0 29000 0.001250000000 0.730150582959 0.496866795945 1.000000000000 +chr1 19123000 19124000 Tfap2d 800.0 30000 0.001750000000 0.732642811477 0.706574697058 1.400000000000 +chr1 19124000 19125000 Tfap2d 800.0 31000 0.002250000000 0.758317068786 0.905161684870 1.800000000000 +chr1 19125000 19126000 Tfap2d 800.0 32000 0.002750000000 0.480737541697 1.153682147360 2.200000000000 +chr1 19126000 19127000 Tfap2d 800.0 33000 0.003000000000 0.484322511884 1.279511523854 2.400000000000 +chr1 19127000 19128000 Tfap2d 800.0 34000 0.002500000000 0.481543605756 1.111814085462 2.000000000000 +chr1 19128000 19129000 Tfap2d 800.0 35000 0.002750000000 0.449902561688 1.293818679354 2.200000000000 +chr1 19129000 19130000 Tfap2d 800.0 36000 0.002250000000 0.731093851644 1.087770500930 1.800000000000 +chr1 19130000 19131000 Tfap2d 800.0 37000 0.001250000000 0.743077286604 0.619604724633 1.000000000000 +chr1 19131000 19132000 Tfap2d 800.0 38000 0.001000000000 0.281762440079 0.507773628084 0.800000000000 +chr1 19132000 19133000 Tfap2d 800.0 39000 0.001500000000 0.722688489844 0.766333205611 1.200000000000 +chr1 19133000 19134000 Tfap2d 800.0 40000 0.002000000000 0.741317064321 0.961326118464 1.600000000000 +chr1 19134000 19135000 Tfap2d 800.0 41000 0.002250000000 0.735204850266 1.100549008579 1.800000000000 +chr1 19135000 19136000 Tfap2d 800.0 42000 0.002500000000 0.430167489874 1.206882246590 2.000000000000 +chr1 19136000 19137000 Tfap2d 800.0 43000 0.003500000000 0.432759024319 1.763764372185 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0.381647233130 0.641810212045 0.800000000000 +chr1 19147000 19148000 Tfap2d 800.0 54000 0.000750000000 0.386115535443 0.523741352272 0.600000000000 +chr1 19148000 19149000 Tfap2d 800.0 55000 0.001000000000 0.398615654765 0.708722340602 0.800000000000 +chr1 19149000 19150000 Tfap2d 800.0 56000 0.000500000000 0.398461693032 0.355875534288 0.400000000000 +chr1 19150000 19151000 Tfap2d 800.0 57000 0.000500000000 0.405640947317 0.365240679736 0.400000000000 +chr1 19151000 19152000 Tfap2d 800.0 58000 0.000750000000 0.405617224646 0.546662198984 0.600000000000 +chr1 19152000 19153000 Tfap2d 800.0 59000 0.000500000000 0.392564680967 0.361279284049 0.400000000000 +chr1 19153000 19154000 Tfap2d 800.0 60000 0.000250000000 0.393712331703 0.171700773197 0.200000000000 +chr1 19154000 19155000 Tfap2d 800.0 61000 0.000500000000 0.397980382520 0.352113636434 0.400000000000 +chr1 19155000 19156000 Tfap2d 800.0 62000 0.000500000000 0.410248598681 0.376809389136 0.400000000000 +chr1 19156000 19157000 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+chr1 19281000 19282000 Tfap2d 800.0 188000 0.000500000000 0.647869186187 0.890640373956 0.400000000000 +chr1 19282000 19283000 Tfap2d 800.0 189000 0.000000000000 0.671654971880 0.000000000000 0.000000000000 +chr1 19283000 19284000 Tfap2d 800.0 190000 0.000250000000 0.671941112135 0.486987573219 0.200000000000 +chr1 19284000 19285000 Tfap2d 800.0 191000 0.000250000000 0.658749839996 0.462638194377 0.200000000000 +chr1 19285000 19286000 Tfap2d 800.0 192000 0.000250000000 0.655383997647 0.457554258138 0.200000000000 +chr1 19286000 19287000 Tfap2d 800.0 193000 0.000500000000 0.676994533785 0.991367559904 0.400000000000 +chr1 19287000 19288000 Tfap2d 800.0 194000 0.000500000000 0.669325066593 0.962715318068 0.400000000000 +chr1 19288000 19289000 Tfap2d 800.0 195000 0.000250000000 0.685162890895 0.510888804001 0.200000000000 +chr1 19289000 19290000 Tfap2d 800.0 196000 0.000250000000 0.685254654751 0.510888804001 0.200000000000 +chr1 19290000 19291000 Tfap2d 800.0 197000 0.000250000000 0.664789163653 0.473152698875 0.200000000000 +chr1 19291000 19292000 Tfap2d 800.0 198000 0.000000000000 0.623323575813 0.000000000000 0.000000000000 +chr1 19292000 19293000 Tfap2d 800.0 199000 0.000000000000 0.643728679260 0.000000000000 0.000000000000 +chr1 19293000 19294000 Tfap2d 800.0 200000 0.000000000000 0.637624930855 0.000000000000 0.000000000000
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicViewpoint/output_3/MB-E10-5_chr1_chr1_4487435_4487435_Sox17.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,405 @@ +# Interaction file, created with HiCExplorer's chicViewpoint version 3.3 +# MB-E10-5_chr1.cool chr1_4487435_4487435 4.29 Mbp 4.69 Mbp Sox17 Sum of interactions in fixate range: 978.0 +# Chromosome Start End Gene Sum of interactions Relative position Relative Interactions p-value x-fold Raw +# +chr1 4287000 4288000 Sox17 978.0 -200000 0.000000000000 0.880044890460 0.000000000000 0.000000000000 +chr1 4288000 4289000 Sox17 978.0 -199000 0.000000000000 0.852151439574 0.000000000000 0.000000000000 +chr1 4289000 4290000 Sox17 978.0 -198000 0.000000000000 0.820756603944 0.000000000000 0.000000000000 +chr1 4290000 4291000 Sox17 978.0 -197000 0.000000000000 0.814190727178 0.000000000000 0.000000000000 +chr1 4291000 4292000 Sox17 978.0 -196000 0.000000000000 0.827190062074 0.000000000000 0.000000000000 +chr1 4292000 4293000 Sox17 978.0 -195000 0.000000000000 0.836281106114 0.000000000000 0.000000000000 +chr1 4293000 4294000 Sox17 978.0 -194000 0.000000000000 0.849921252675 0.000000000000 0.000000000000 +chr1 4294000 4295000 Sox17 978.0 -193000 0.000000000000 0.861786083744 0.000000000000 0.000000000000 +chr1 4295000 4296000 Sox17 978.0 -192000 0.000000000000 0.859809384515 0.000000000000 0.000000000000 +chr1 4296000 4297000 Sox17 978.0 -191000 0.000000000000 0.853754951451 0.000000000000 0.000000000000 +chr1 4297000 4298000 Sox17 978.0 -190000 0.000000000000 0.873048946174 0.000000000000 0.000000000000 +chr1 4298000 4299000 Sox17 978.0 -189000 0.000000000000 0.867850964512 0.000000000000 0.000000000000 +chr1 4299000 4300000 Sox17 978.0 -188000 0.000000000000 0.860889061003 0.000000000000 0.000000000000 +chr1 4300000 4301000 Sox17 978.0 -187000 0.000000000000 0.863889228734 0.000000000000 0.000000000000 +chr1 4301000 4302000 Sox17 978.0 -186000 0.000000000000 0.853953368554 0.000000000000 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/referencePoints.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,43 @@ +chr1 4487435 4487435 Sox17 +chr1 14300280 14300280 Eya1 +chr1 19093103 19093103 Tfap2d +chr1 19198995 19198995 Tfap2b +chr1 24202042 24202042 Col9a1 +chr1 33776741 33776741 Rab23 +chr1 38684089 38684089 Aff3 +chr1 42753991 42753991 Pou3f3 +chr1 52176282 52176282 Stat1 +chr1 52557292 52557292 Nab1 +chr1 53118507 53118507 Mstn +chr1 57028178 57028178 Satb2 +chr1 59821123 59821123 Bmpr2 +chr1 66991630 66991630 Myl1 +chr1 74648029 74648029 Stk36 +chr1 74818466 74818466 Wnt6 +chr1 74838593 74838593 Wnt10a +chr1 74998246 74998246 Ihh +chr1 75356867 75356867 Des +chr1 77511663 77511663 Epha4 +chr1 78193711 78193711 Pax3 +chr1 89102386 89102386 Chrng +chr1 93355905 93355905 Per2 +chr1 93698054 93698054 Twist2 +chr1 94076918 94076918 Hdac4 +chr1 107677300 107677300 Tnfrsf11a +chr1 120950196 120950196 Gli2 +chr1 122499064 122499064 En1 +chr1 127808791 127808791 Lypd1 +chr1 135934092 135934092 Fmod +chr1 136186581 136186581 MyoG +chr1 152313295 152313295 Prg4 +chr1 164004278 164006270 mm712 +chr1 164147754 164147754 Dnm3os +chr1 165243781 165243781 Prrx1 +chr1 165333772 165333772 Gorab +chr1 169619689 169619689 Lmx1a +chr1 170362300 170362300 Pbx1 +chr1 180249284 180249284 Gm16586 +chr1 182823250 182823250 Lefty2 +chr1 182865170 182865170 Lefty1 +chr1 188529871 188529871 Tgfb2 +chr1 194979306 194979306 Irf6
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/referencePoints_chicViewpoint.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,4 @@ +chr1 4487435 4487435 Sox17 +chr1 14300280 14300280 Eya1 +chr1 19093103 19093103 Tfap2d +
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicFindRestrictionSites/reference_genome.fasta Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,2 @@ +>chr1 +CTACGGTACGAACGTACGGTACGcgtaCGNAGTCATG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicFindRestrictionSites/restriction_sites.bed Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,4 @@ +chr1 5 9 . 0 + +chr1 13 17 . 0 + +chr1 18 22 . 0 + +chr1 24 28 . 0 +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicInfo/hicInfo_output.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Matrix information file. Created with HiCExplorer's hicInfo version 3.3 +File: matrix_name.h5 +Size: 33,754 +Bin_length: 5000 +Sum of matrix: 35778.0 +Chromosomes: chr2L, chr2LHet, chr2R, chr2RHet, chr3L, chr3LHet, chr3R, chr3RHet, chr4, chrM, chrUextra, chrU, chrX, chrXHet, chrYHet +Non-zero elements: 69,213 +Minimum (non zero): 1 +Maximum: 8 +NaN bins: 0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicInfo_output.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,10 @@ +# Matrix information file. Created with HiCExplorer's hicInfo version 3.1 +File: matrix_name.h5 +Size: 3,383 +Bin_length: 50000 +Sum of matrix: 32798.5 +Chromosomes: chr2RHet, chr3RHet, chr2LHet, chr4, chrYHet, chr3L, chr2L, chrU, chrX, chrXHet, chr2R, chr3R, chrUextra, chrM, chr3LHet +Non-zero elements: 45,981 +Minimum (non zero): 1 +Maximum: 68 +NaN bins: 664 \ No newline at end of file
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicPlotSVL/p_values.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,4 @@ +# Created with HiCExplorer's hicPlotSVL 3.3 +# Short range vs long range contacts per chromosome, p-values of each distribution against each other distribution with Wilcoxon rank-sum +# Short range contacts: <= 2000000 +0_small_test_matrix.h5 1_small_test_matrix.h5 1.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicPlotSVL/ratios.txt Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,8 @@ +# Created with HiCExplorer's hicPlotSVL 3.3 +# Short range vs long range contacts per chromosome: raw data +# Short range contacts: <= 2000000 +# 0_small_test_matrix.h5 1_small_test_matrix.h5 +# Chromosome Ratio Sum <= 2000000 Sum > 2000000 Ratio Sum <= 2000000 Sum > 2000000 +chr2L 4.7639676113360325 11767 2470 4.7639676113360325 11767 2470 +chr3L 4.8960869565217395 11261 2300 4.8960869565217395 11261 2300 +chr4
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicQuickQC/QC.log Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,29 @@ + +File /tmp/tmpp4d6khlj.h5 +Sequenced reads 983 +Min rest. site distance 300 +Max library insert size 1000 + +# count (percentage w.r.t. total sequenced reads) +Pairs mappable, unique and high quality 300 (30.52) +Hi-C contacts 215 (21.87) +One mate unmapped 506 (51.48) +One mate not unique 13 (1.32) +Low mapping quality 164 (16.68) + +# count (percentage w.r.t. mappable, unique and high quality pairs) +dangling end 0 (0.00) +self ligation (removed) 0 (0.00) +One mate not close to rest site 0 (0.00) +same fragment 85 (28.33) +self circle 0 (0.00) +duplicated pairs 0 (0.00) + +# count (percentage w.r.t. total valid pairs used) +inter chromosomal 24 (11.16) +Intra short range (< 20kb) 61 (28.37) +Intra long range (>= 20kb) 130 (60.47) +Read pair type: inward pairs 42 (19.53) +Read pair type: outward pairs 66 (30.70) +Read pair type: left pairs 48 (22.33) +Read pair type: right pairs 35 (16.28)
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hicValidateLocations/overlap_smc3_statistics Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,7 @@ +# HiCExplorer hicValidateLocations 3.3 +# Overlap of loop file /tmp/tmpo82hqd2o/files/4/a/4/dataset_4a45db46-19b9-4b40-9d5b-d049a100e2aa.dat with protein file /tmp/tmpo82hqd2o/files/3/5/8/dataset_358b0ce7-ab08-46fc-8968-195d416429ca.dat +# +Protein peaks: 3097 +Matched Loops: 530 +Total Loops: 1007 +Loops match protein: 0.5263157894736842
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/li_32-33mb_interactions.bedgraph Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,2 @@ +X 3139841 3367043 X 2851659 3139841 28764.634828529033 +X 3139841 3367043 X 3139841 3367043 139691.503741355060
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/raw_qc_report Mon Dec 16 14:30:02 2019 -0500 @@ -0,0 +1,29 @@ + +File matrix.cool +Sequenced reads 983 +Min rest. site distance 300 +Max library insert size 1000 + +# count (percentage w.r.t. total sequenced reads) +Pairs mappable, unique and high quality 300 (30.52) +Hi-C contacts 215 (21.87) +One mate unmapped 506 (51.48) +One mate not unique 13 (1.32) +Low mapping quality 164 (16.68) + +# count (percentage w.r.t. mappable, unique and high quality pairs) +dangling end 0 (0.00) +self ligation (removed) 0 (0.00) +One mate not close to rest site 0 (0.00) +same fragment 85 (28.33) +self circle 0 (0.00) +duplicated pairs 0 (0.00) + +# count (percentage w.r.t. total valid pairs used) +inter chromosomal 24 (11.16) +Intra short range (< 20kb) 61 (28.37) +Intra long range (>= 20kb) 130 (60.47) +Read pair type: inward pairs 42 (19.53) +Read pair type: outward pairs 66 (30.70) +Read pair type: left pairs 48 (22.33) +Read pair type: right pairs 35 (16.28)