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diff -r 000000000000 -r d515a0639f8e tool-data/bowtie2_indices.loc.sample
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/bowtie2_indices.loc.sample Thu Mar 09 09:30:33 2017 -0500
@@ -0,0 +1,37 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of Bowtie2 indexed sequences data files. You will
+#need to create these data files and then create a bowtie_indices.loc
+#file similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The bowtie2_indices.loc
+#file has this format (longer white space characters are TAB characters):
+#
+#
+
+
+ 
Processing Report
+
+
+ dataset_1265_4.dat
+17-02-51_23-01-2017
++ +
Truncating and Mapping
+
+
+
+
+
+
+
+
+
+ | + | Read 1 | +Read 2 | +
|---|---|---|
| Total Reads | +1000 | +1000 | +
| Not Truncated | +923 | +939 | +
| Truncated | +77 | +61 | +
| Too short to map | +35 | +24 | +
| Average length of truncated sequence | +21.39 | +22.21 | +
| + | Read 1 | +Read 2 | +
|---|---|---|
| Unique Alignments | +14 | +23 | +
| Multiple Alignments | +13 | +7 | +
| Failed To Align | +938 | +946 | +
| Paired | +1 | +1 | +
+ + +
Filtering
+| + | Di-Tag Count | +
|---|---|
| Valid Pairs | +1 | +
| Invalid Pairs | +0 | +
| Same Circularised | +0 | +
| Same Fragment Dangling Ends | +0 | +
| Same Fragment Internal | +0 | +
| Re-ligation | +0 | +
| Contiguous Sequence | +0 | +
| Wrong Size | +0 | +
| Total Pairs | +1 | +
+
Di-tag length Distribution
+ ++ +
De-duplication
+Percentage uniques: 100.00
+| + | All Di-Tags | +Unique Di-Tags | +
|---|---|---|
| Read Pairs | +1 | +1 | +
| Cis-close (< 10Kbp) | +0 | +0 | +
| Cis-far (> 10Kbp) | +1 | +1 | +
| Trans | +0 | +0 | +
+ + +