Mercurial > repos > bgruening > hicup_filter
comparison hicup_macros.xml @ 1:b0e1933771da draft
planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b4d9ad47b45abb117a059214e1f7b29d084b4ca3
| author | bgruening |
|---|---|
| date | Sat, 19 Aug 2017 07:39:19 -0400 |
| parents | 566da23a5a08 |
| children | cfa9c047cda4 |
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| 0:566da23a5a08 | 1:b0e1933771da |
|---|---|
| 73 </xml> | 73 </xml> |
| 74 <xml name="re2"> | 74 <xml name="re2"> |
| 75 <param argument="--re2" type="text" value="" label="Restriction enzyme instead of sonication to shorten di-tags." help="To specify a restriction enzyme instead of sonication to shorten di-tags. This restriction site does NOT form a Hi-C ligation junction. 2 .g. AG^CT,AluI. Typically the sonication protocol is followed."/> | 75 <param argument="--re2" type="text" value="" label="Restriction enzyme instead of sonication to shorten di-tags." help="To specify a restriction enzyme instead of sonication to shorten di-tags. This restriction site does NOT form a Hi-C ligation junction. 2 .g. AG^CT,AluI. Typically the sonication protocol is followed."/> |
| 76 </xml> | 76 </xml> |
| 77 <xml name="digester_input"> | 77 <xml name="digester_input"> |
| 78 <param name="input_files_digest" type="data" multiple="true" format="fa" label="Input DNA sequence files that should be digested"/> | 78 <param name="input_files_digest" type="data" multiple="true" format="fasta" label="Input DNA sequence files that should be digested"/> |
| 79 <param argument="--genome" type="text" label="Genome" help="Name of the genome to be digested (not the path to the genome | 79 <param argument="--genome" type="text" label="Genome" help="Name of the genome to be digested (not the path to the genome |
| 80 file or files, but the genome name to include in the output file)"/> | 80 file or files, but the genome name to include in the output file)"/> |
| 81 </xml> | 81 </xml> |
| 82 <xml name="filter_longest_shortest"> | 82 <xml name="filter_longest_shortest"> |
| 83 <param argument="--longest" type="text" value="" label="Max insert size" help="Maximum allowable insert size (bps)"/> | 83 <param argument="--longest" type="text" value="" label="Max insert size" help="Maximum allowable insert size (bps)"/> |