Mercurial > repos > bgruening > hicup_hicup
changeset 2:e96cb39c3f8e draft
planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit c546c919808a853d3e1556cb28bb4a5f7e1f9932
| author | bgruening |
|---|---|
| date | Tue, 07 Nov 2017 02:48:23 -0500 |
| parents | b191af7e2476 |
| children | 246aed60d62f |
| files | hicup_hicup.xml hicup_macros.xml |
| diffstat | 2 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/hicup_hicup.xml Sat Aug 19 07:39:34 2017 -0400 +++ b/hicup_hicup.xml Tue Nov 07 02:48:23 2017 -0500 @@ -1,4 +1,4 @@ -<tool id="hicup_hicup" name="Hicup Pipeline" version="0.1.0"> +<tool id="hicup_hicup" name="Hicup Pipeline" version="@VERSION@.0"> <description>controls the other programs in the HiCUP pipeline.</description> <macros> <import>hicup_macros.xml</import> @@ -99,7 +99,7 @@ <section name="advanced_options" title="Advanced options"> <expand macro="re2" /> <expand macro="filter_longest_shortest" /> - <expand macro="no_fill" /> + <expand macro="no_fill" /> </section> </inputs> <outputs> @@ -134,7 +134,7 @@ <!-- outputs --> <output name="hicup_results" file="results.html" ftype="html" lines_diff="10000"/> - <output name="dataset_hicup" file="dataset.hicup.sam" lines_diff="5" /> + <output name="dataset_hicup" file="dataset.hicup.sam" lines_diff="10" /> <output name="hicup_report" file="HiCUP_summary_report.txt" lines_diff="2"/> <output_collection name="intermediate_results">
--- a/hicup_macros.xml Sat Aug 19 07:39:34 2017 -0400 +++ b/hicup_macros.xml Tue Nov 07 02:48:23 2017 -0500 @@ -1,8 +1,8 @@ - <macros> - <xml name="requirements_hicup"> + <token name="@VERSION@">0.5.10</token> + <xml name="requirements_hicup"> <requirements> - <requirement type="package" version="0.5.9">hicup</requirement> + <requirement type="package" version="@VERSION@">hicup</requirement> <requirement type="package" version="2.2.6">bowtie2</requirement> <requirement type="package" version="1.2">samtools</requirement> <requirement type="package" version="0.13.1">docutils</requirement>