comparison hifiasm.xml @ 18:df25d4fb79b7 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hifiasm commit 59abcbabcdbfb8b5bdb0abcd5d3f24fee19abd6f

17:0ee0c3089254

<tool id="hifiasm" name="Hifiasm" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>haplotype-resolved de novo assembler for PacBio Hifi reads</description>
    <macros>
        <token name="@TOOL_VERSION@">0.19.8</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <token name="@FORMATS@">fasta,fasta.gz,fastq,fastq.gz</token>
        <xml name="reads">
            <param name="reads" type="data" format="@FORMATS@" multiple="true" label="Input reads" />
        </xml>
    </macros>

                <option value="blank">Leave default</option>
                <option value="set">Specify</option>
            </param>
            <when value="blank" />
            <when value="set">
                <param argument="--ul" type="data" format="fastq,fastq.gz,fasta,fasta.gz" multiple="true" label="Ultra-long (>10kb) reads" />
                <param argument="--ul-rate" type="float" value="0.2" optional="true" label="error rate of ultra-long reads (default 0.2)" />
                <param argument="--ul-tip" type="integer" value="6" optional="true" label="remove tip unitigs composed of less than (INT) reads for the UL assembly (default 6)" />
            </when>
        </conditional>
        <conditional name="advanced_options">

18:df25d4fb79b7

<tool id="hifiasm" name="Hifiasm" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
    <description>haplotype-resolved de novo assembler for PacBio Hifi reads</description>
    <macros>
        <token name="@TOOL_VERSION@">0.19.8</token>
        <token name="@VERSION_SUFFIX@">1</token>
        <token name="@FORMATS@">fasta,fasta.gz,fastq,fastq.gz</token>
        <xml name="reads">
            <param name="reads" type="data" format="@FORMATS@" multiple="true" label="Input reads" />
        </xml>
    </macros>

                <option value="blank">Leave default</option>
                <option value="set">Specify</option>
            </param>
            <when value="blank" />
            <when value="set">
                <param argument="--ul" type="data" format="fastq,fastq.gz,fasta,fasta.gz" multiple="true" label="Ultra-long (>100kb) reads" />
                <param argument="--ul-rate" type="float" value="0.2" optional="true" label="error rate of ultra-long reads (default 0.2)" />
                <param argument="--ul-tip" type="integer" value="6" optional="true" label="remove tip unitigs composed of less than (INT) reads for the UL assembly (default 6)" />
            </when>
        </conditional>
        <conditional name="advanced_options">