Mercurial > repos > bgruening > imagej2_crop
diff imagej2_create_image_jython_script.py @ 0:018144807556 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author | bgruening |
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date | Tue, 24 Sep 2024 17:12:52 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imagej2_create_image_jython_script.py Tue Sep 24 17:12:52 2024 +0000 @@ -0,0 +1,15 @@ +import sys + +from ij import IJ + +# Fiji Jython interpreter implements Python 2.5 which does not +# provide support for argparse. +title = sys.argv[-6] +width = int(sys.argv[-5]) +height = int(sys.argv[-4]) +depth = int(sys.argv[-3]) +type = sys.argv[-2].replace("_", " ") +tmp_image_path = sys.argv[-1] + +imp = IJ.newImage(title, type, width, height, depth) +IJ.save(imp, "%s" % tmp_image_path)