Mercurial > repos > bgruening > infernal

annotate test-data/infernal.loc @ 10:3711f654044e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 4fecc1be8a950820a469f6bb5e252ae7dfc59b7b
author bgruening
date Wed, 20 Nov 2024 12:43:21 +0000
parents 1d74ed49cf41
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
9
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that is used to define a
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
2 #list of infernal covariance models, using three columns tab separated
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
3 #(longer whitespace are TAB characters):
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
4 #
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
5 #The entries are as follows:
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
6 #
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
7 #<unique_id> <covariance model name> <path>
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
8 #
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
9 #Your infernal.loc file should include an entry per line for each "base name"
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
10 #you have stored. For example:
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
11 #
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
12 #rfam01 RFAM 4.2 08 Aug 2013 /data/0/galaxy_data/infernal/08_08_2013/rfam.cm
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
13 #
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
14 #...etc...
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
15 #
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
16
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
17 cmstat_input.cm Test case: cmstat_input ${__HERE__}/cmstat_input.cm
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
18 cmsearch_input1.cm Test case: cmsearch_input1 ${__HERE__}/cmsearch_input1.cm
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
19 minifam.cm Test case: minifam.cm ${__HERE__}/minifam.cm
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
20 cmpress_input_minifam.cm Test case: cmpress_input_minifam.cm ${__HERE__}/cmpress_input_minifam.cm
1d74ed49cf41 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 09c1d4ab75f5cd057ed57bf694217f0e355f785e
bgruening
parents:
diff changeset
21 cmalign_input2_tRNA5.c.cm Test case: cmalign_input2_tRNA5.c.cm ${__HERE__}/cmalign_input2_tRNA5.c.cm