diff cmstat.xml @ 3:2c2c5e5e495b draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit 9eeedfaf35c069d75014c5fb2e42046106bf813c-dirty

--- a/cmstat.xml	Fri Feb 13 03:10:51 2015 -0500
+++ b/cmstat.xml	Fri Mar 04 07:24:53 2016 -0500
@@ -60,8 +60,8 @@
 The cmstat utility prints out a tabular file of summary statistics for each given covariance model.
 
 
-Output format
--------------
+**Output format**
+
 
 By default, cmstat prints general statistics of the model and the alignment it was built from, one line per model in a
 tabular format.
@@ -86,20 +86,21 @@
      relative entropy, the more the model will rely on structural conservation relative sequence conservation when identifying homologs.
 
 
-For further questions please refere to the Infernal Userguide_.
-
-.. _Userguide: http://selab.janelia.org/software/infernal/Userguide.pdf
-
-
-How do I cite Infernal?
------------------------
-
-The recommended citation for using Infernal 1.1 is E. P. Nawrocki and S. R. Eddy, Infernal 1.1: 100-fold faster RNA homology searches , Bioinformatics 29:2933-2935 (2013).
-
-**Galaxy Wrapper Author**::
-
-    *  Bjoern Gruening, University of Freiburg
+For further questions please refere to the Infernal `Userguide <http://selab.janelia.org/software/infernal/Userguide.pdf>`_.
 
 ]]>
     </help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btt509</citation>
+        <citation type="bibtex">
+            @ARTICLE{bgruening_galaxytools,
+                Author = {Björn Grüning, Cameron Smith, Torsten Houwaart, Nicola Soranzo, Eric Rasche},
+                keywords = {bioinformatics, ngs, galaxy, cheminformatics, rna},
+                title = {{Galaxy Tools - A collection of bioinformatics and cheminformatics tools for the Galaxy environment}},
+                url = {https://github.com/bgruening/galaxytools}
+            }
+        </citation>
+    </citations>
+  
+    
 </tool>