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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/infernal commit a812ed8de433ac4e8b42afd636e70cfbb180d2b9"
| author | bgruening |
|---|---|
| date | Thu, 23 Sep 2021 19:38:58 +0000 |
| parents | 6e18e0b098cd |
| children |
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# cmsearch :: search CM(s) against a sequence database # INFERNAL 1.1 (June 2012) # Copyright (C) 2012 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query CM file: tRNA5.c.cm # target sequence database: mrum-genome.fa # number of worker threads: 2 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: tRNA5 [CLEN=72] Hit scores: rank E-value score bias sequence start end mdl trunc gc description ---- --------- ------ ----- ----------- ------- ------- --- ----- ---- ----------- (1) ! 1.3e-18 71.5 0.0 NC_013790.1 362026 361955 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome (2) ! 3.3e-18 70.2 0.0 NC_013790.1 2585265 2585193 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome (3) ! 9e-18 68.8 0.0 NC_013790.1 762490 762562 + cm no 0.67 Methanobrevibacter ruminantium M1 chromosome, complete genome (4) ! 9e-18 68.8 0.0 NC_013790.1 2041704 2041632 - cm no 0.67 Methanobrevibacter ruminantium M1 chromosome, complete genome (5) ! 2.5e-17 67.4 0.0 NC_013790.1 2351254 2351181 - cm no 0.62 Methanobrevibacter ruminantium M1 chromosome, complete genome (6) ! 3e-17 67.2 0.0 NC_013790.1 735136 735208 + cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome (7) ! 5.2e-17 66.4 0.0 NC_013790.1 2186013 2185941 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome (8) ! 1.6e-16 64.8 0.0 NC_013790.1 2350593 2350520 - cm no 0.66 Methanobrevibacter ruminantium M1 chromosome, complete genome (9) ! 2.8e-16 64.1 0.0 NC_013790.1 2585187 2585114 - cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome (10) ! 9.1e-16 62.5 0.0 NC_013790.1 662185 662259 + cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome (11) ! 1.2e-15 62.1 0.0 NC_013790.1 360887 360815 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome (12) ! 1.6e-15 61.7 0.0 NC_013790.1 2350984 2350911 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome (13) ! 3.3e-15 60.7 0.0 NC_013790.1 2186090 2186019 - cm no 0.54 Methanobrevibacter ruminantium M1 chromosome, complete genome (14) ! 4.1e-15 60.4 0.0 NC_013790.1 2680159 2680233 + cm no 0.67 Methanobrevibacter ruminantium M1 chromosome, complete genome (15) ! 7.9e-15 59.5 0.0 NC_013790.1 2749839 2749768 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome (16) ! 7.9e-15 59.5 0.0 NC_013790.1 2749945 2749874 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome (17) ! 9.8e-15 59.2 0.0 NC_013790.1 361676 361604 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome (18) ! 1e-14 59.2 0.0 NC_013790.1 2585073 2584999 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome (19) ! 1.1e-14 59.1 0.0 NC_013790.1 2130422 2130349 - cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome (20) ! 1.2e-14 58.9 0.0 NC_013790.1 546056 545947 - cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome (21) ! 3.9e-14 57.3 0.0 NC_013790.1 361915 361844 - cm no 0.42 Methanobrevibacter ruminantium M1 chromosome, complete genome (22) ! 5.1e-14 57.0 0.0 NC_013790.1 97724 97795 + cm no 0.49 Methanobrevibacter ruminantium M1 chromosome, complete genome (23) ! 6.1e-14 56.7 0.0 NC_013790.1 2350717 2350646 - cm no 0.68 Methanobrevibacter ruminantium M1 chromosome, complete genome (24) ! 8e-14 56.3 0.0 NC_013790.1 1873887 1873815 - cm no 0.64 Methanobrevibacter ruminantium M1 chromosome, complete genome (25) ! 1.4e-13 55.6 0.0 NC_013790.1 360730 360659 - cm no 0.40 Methanobrevibacter ruminantium M1 chromosome, complete genome (26) ! 3.5e-13 54.3 0.0 NC_013790.1 2680310 2680384 + cm no 0.52 Methanobrevibacter ruminantium M1 chromosome, complete genome (27) ! 3.6e-13 54.3 0.0 NC_013790.1 2664806 2664732 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome (28) ! 3.6e-13 54.3 0.0 NC_013790.1 361061 360989 - cm no 0.41 Methanobrevibacter ruminantium M1 chromosome, complete genome (29) ! 7.5e-13 53.3 0.0 NC_013790.1 2130335 2130262 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome (30) ! 7.6e-13 53.3 0.0 NC_013790.1 2151672 2151745 + cm no 0.65 Methanobrevibacter ruminantium M1 chromosome, complete genome (31) ! 2.9e-12 51.4 0.0 NC_013790.1 319297 319370 + cm no 0.62 Methanobrevibacter ruminantium M1 chromosome, complete genome (32) ! 3.7e-12 51.1 0.0 NC_013790.1 361753 361679 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome (33) ! 3.8e-12 51.1 0.0 NC_013790.1 360983 360912 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome (34) ! 5.9e-12 50.5 0.0 NC_013790.1 361456 361383 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome (35) ! 7.4e-12 50.1 0.0 NC_013790.1 362798 362727 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome (36) ! 8.7e-12 49.9 0.0 NC_013790.1 917722 917793 + cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome (37) ! 1.1e-11 49.7 0.0 NC_013790.1 2583869 2583798 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome (38) ! 1.3e-11 49.4 0.0 NC_013790.1 362324 362252 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome (39) ! 1.3e-11 49.3 0.0 NC_013790.1 360811 360740 - cm no 0.42 Methanobrevibacter ruminantium M1 chromosome, complete genome (40) ! 4.3e-11 47.7 0.0 NC_013790.1 1160526 1160609 + cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome (41) ! 9.8e-11 46.6 0.0 NC_013790.1 362403 362331 - cm no 0.49 Methanobrevibacter ruminantium M1 chromosome, complete genome (42) ! 1.1e-10 46.5 0.0 NC_013790.1 2327124 2327042 - cm no 0.63 Methanobrevibacter ruminantium M1 chromosome, complete genome (43) ! 1.2e-10 46.4 0.0 NC_013790.1 995344 995263 - cm no 0.49 Methanobrevibacter ruminantium M1 chromosome, complete genome (44) ! 2.3e-10 45.5 0.0 NC_013790.1 256772 256696 - cm no 0.57 Methanobrevibacter ruminantium M1 chromosome, complete genome (45) ! 2.5e-10 45.3 0.0 NC_013790.1 2584830 2584758 - cm no 0.64 Methanobrevibacter ruminantium M1 chromosome, complete genome (46) ! 6.1e-10 44.1 0.0 NC_013790.1 2351071 2350997 - cm no 0.59 Methanobrevibacter ruminantium M1 chromosome, complete genome (47) ! 6.5e-10 44.0 0.0 NC_013790.1 362552 362482 - cm no 0.55 Methanobrevibacter ruminantium M1 chromosome, complete genome (48) ! 5.2e-09 41.2 0.0 NC_013790.1 1064775 1064858 + cm no 0.63 Methanobrevibacter ruminantium M1 chromosome, complete genome (49) ! 1.2e-08 40.0 0.0 NC_013790.1 361222 361150 - cm no 0.45 Methanobrevibacter ruminantium M1 chromosome, complete genome (50) ! 1.2e-08 40.0 0.0 NC_013790.1 361369 361297 - cm no 0.60 Methanobrevibacter ruminantium M1 chromosome, complete genome (51) ! 4.8e-08 38.1 0.0 NC_013790.1 361596 361513 - cm no 0.61 Methanobrevibacter ruminantium M1 chromosome, complete genome (52) ! 3.2e-07 35.5 0.0 NC_013790.1 1913310 1913227 - cm no 0.64 Methanobrevibacter ruminantium M1 chromosome, complete genome (53) ! 2.6e-06 32.7 0.0 NC_013790.1 363464 363381 - cm no 0.51 Methanobrevibacter ruminantium M1 chromosome, complete genome (54) ! 3e-06 32.5 0.0 NC_013790.1 2584954 2584872 - cm no 0.58 Methanobrevibacter ruminantium M1 chromosome, complete genome ------ inclusion threshold ------ (55) ? 0.027 20.0 0.0 NC_013790.1 363803 363716 - cm no 0.50 Methanobrevibacter ruminantium M1 chromosome, complete genome (56) ? 3.4 13.4 0.0 NC_013790.1 984373 984304 - cm no 0.53 Methanobrevibacter ruminantium M1 chromosome, complete genome Hit alignments: >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (1) ! 1.3e-18 71.5 0.0 cm 1 72 [] 362026 361955 - .. 1.00 no 0.50 v v v v NC (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G: G::AUAGC:CA+UGG AG:GCG:::G:CUG+CA :C:::AGGU : GGGUUCGAUUCCC :U::C :CA NC_013790.1 362026 GGAGCUAUAGCUCAAUGGCAGAGCGUUUGGCUGACAUCCAAAAGGUUAUGGGUUCGAUUCCCUUUAGCCCCA 361955 ************************************************************************ PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (2) ! 3.3e-18 70.2 0.0 cm 1 72 [] 2585265 2585193 - .. 1.00 no 0.60 v v NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCCG:C:UAGC:CAGU GGUAG:GCG ::G:CUGU AA:C:: GGUC:::GGUUCGA +CC::::G:CGGC+ NC_013790.1 2585265 GCCGUCGUAGCUCAGUaGGUAGAGCGUUCGGCUGUUAACCGAUUGGUCACAGGUUCGAGCCCUGUCGACGGCG 2585193 ************************************************************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (3) ! 9e-18 68.8 0.0 cm 1 72 [] 762490 762562 + .. 1.00 no 0.67 NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::C UAGC:CAGU GG AG:GCGC:::CCU+ CAAG:::GAGG CC:GGGUUC A UCCC:G G::::CA NC_013790.1 762490 GGGCCCGUAGCUCAGUuGGGAGAGCGCUGCCCUUGCAAGGCAGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA 762562 ************************************************************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (4) ! 9e-18 68.8 0.0 cm 1 72 [] 2041704 2041632 - .. 1.00 no 0.67 NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::C UAGC:CAGU GG AG:GCGC:::CCU+ CAAG:::GAGG CC:GGGUUC A UCCC:G G::::CA NC_013790.1 2041704 GGGCCCGUAGCUCAGUuGGGAGAGCGCUGCCCUUGCAAGGCAGAGGCCCCGGGUUCAAAUCCCGGUGGGUCCA 2041632 ************************************************************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (5) ! 2.5e-17 67.4 0.0 cm 1 72 [] 2351254 2351181 - .. 1.00 no 0.62 NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCC :::U+GC:CAGU GGUAG:GCGC:AG:CU+ AA:CU:G GGUC :GGGUUC AUUCCC: ::: GGC NC_013790.1 2351254 GCCUCGGUGGCUCAGUcuGGUAGAGCGCGAGACUUGUAAUCUCGUGGUCGCGGGUUCAAUUCCCGUCCGGGGCU 2351181 ************************************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (6) ! 3e-17 67.2 0.0 cm 1 72 [] 735136 735208 + .. 1.00 no 0.59 NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCC::::U+GC:CAG GGUAG:GCGC:A:C+UG AAG:U:GA GUC:GGGGUUCGA UCCCC:::::GGC NC_013790.1 735136 GCCUUAGUGGCUCAGCcGGUAGAGCGCUACCUUGGUAAGGUAGAAGUCGGGGGUUCGAAUCCCCCCUAAGGCU 735208 ************************************************************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (7) ! 5.2e-17 66.4 0.0 cm 1 72 [] 2186013 2185941 - .. 1.00 no 0.53 NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCC::::UAG::CAGU GG AG::CGCCAG:CUG+++A:CUGGA GUC:::GGUUC A UCC:::::::GGCA NC_013790.1 2186013 GCCAUGUUAGUUCAGUuGGGAGAACGCCAGACUGAAGAUCUGGAUGUCGCUGGUUCAAGUCCGGCACAUGGCA 2185941 ************************************************************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (8) ! 1.6e-16 64.8 0.0 cm 1 72 [] 2350593 2350520 - .. 1.00 no 0.66 NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::C:UAGC:CAGU GG AG:GCGC::G:CU+U AA:C::G GG C :GGGUUC AUUCCC: :G::::C+ NC_013790.1 2350593 GGGCCCGUAGCUCAGUcuGGCAGAGCGCUUGGCUUUUAACCAAGCGGCCGCGGGUUCAAUUCCCGUCGGGCCCG 2350520 ************************************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (9) ! 2.8e-16 64.1 0.0 cm 1 72 [] 2585187 2585114 - .. 1.00 no 0.59 NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::CAUAGC::AG GGUA::GCGC :G:CU + AA:C: GA GUC::GGGUUCGA UCCC::UG::::CA NC_013790.1 2585187 GGGCCCAUAGCUUAGCcaGGUAGAGCGCUCGGCUCAUAACCGGGAUGUCAUGGGUUCGAAUCCCAUUGGGCCCA 2585114 ************************************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (10) ! 9.1e-16 62.5 0.0 cm 1 72 [] 662185 662259 + .. 1.00 no 0.61 v v NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 :::::::U+GC CAG GGU AG GCGC::G:CUG+ AA:C::GAGGUCC:GGGUUCGA UCCC:G:::::::A NC_013790.1 662185 AGGCUAGUGGCACAGCcuGGUcAGCGCGCACGGCUGAUAACCGUGAGGUCCUGGGUUCGAAUCCCAGCUAGCCUA 662259 ***************999********************************************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (11) ! 1.2e-15 62.1 0.0 cm 1 72 [] 360887 360815 - .. 1.00 no 0.55 v v NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G:::: :U+G:::A+U GGUA:::CG:C::CCU+ C+AG::G:AG+ ::GGGUUCGA UCCC::: ::::CA NC_013790.1 360887 GGGCCUGUGGUCUAAUuGGUAUGACGUCUCCCUUGCGAGGAGAAGACUUUGGGUUCGACUCCCAACUGGUCCA 360815 ************************************************************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (12) ! 1.6e-15 61.7 0.0 cm 1 72 [] 2350984 2350911 - .. 1.00 no 0.53 NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 :CCG:C:UAGC:CA+U GG AG:GCG:::G:CUGU++A:C:::A GU :::GGUUC A UCC::::G:CGG:A NC_013790.1 2350984 CCCGACUUAGCUCAAUuuGGCAGAGCGUUGGACUGUAGAUCCAAAUGUUGCUGGUUCAAGUCCGGCAGUCGGGA 2350911 ************************************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (13) ! 3.3e-15 60.7 0.0 cm 1 72 [] 2186090 2186019 - .. 1.00 no 0.54 NC (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::: U+::::AG GGUA::::+CC::C+UG+CA G::GG G+UC::G:GUUCGA UC:C:: :::::CA NC_013790.1 2186090 GGACCGGUGGUCUAGGGGUAUGAUACCUCCUUGACAUGGAGGUGAUCACGAGUUCGAAUCUCGUUCGGUCCA 2186019 ************************************************************************ PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (14) ! 4.1e-15 60.4 0.0 cm 1 72 [] 2680159 2680233 + .. 0.99 no 0.67 NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::C:UAGC::AG GG A::GCG:C:G:CU+ AA:C:G:AGG CC:GGGUUC A UCCC:G:G::::C+ NC_013790.1 2680159 GGGCCCGUAGCCUAGCcuGGAuAGGGCGUCGGACUUCUAAUCCGAAGGCCCCGGGUUCAAAUCCCGGCGGGUCCG 2680233 ***************9999999***************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (15) ! 7.9e-15 59.5 0.0 cm 1 72 [] 2749839 2749768 - .. 1.00 no 0.53 NC (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::C:U+::::AG GGUA::::+:C:::CU++CAA:::G: G+UC::G:GUUCGA UC:C:::G::::CA NC_013790.1 2749839 GGUUCCGUGGUCUAGGGGUAUGAUAUCUCGCUUACAACGAGAGGAUCGUGAGUUCGAAUCUCGCCGGAACCA 2749768 ************************************************************************ PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (16) ! 7.9e-15 59.5 0.0 cm 1 72 [] 2749945 2749874 - .. 1.00 no 0.53 NC (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::C:U+::::AG GGUA::::+:C:::CU++CAA:::G: G+UC::G:GUUCGA UC:C:::G::::CA NC_013790.1 2749945 GGUUCCGUGGUCUAGGGGUAUGAUAUCUCGCUUACAACGAGAGGAUCGUGAGUUCGAAUCUCGCCGGAACCA 2749874 ************************************************************************ PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (17) ! 9.8e-15 59.2 0.0 cm 1 72 [] 361676 361604 - .. 1.00 no 0.51 NC (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GC::::AU+G G:A+U GG A:C C+:C:G:CU+UC+A:C:G: + C:GGGUUC A UCCC:GU::::GCA NC_013790.1 361676 GCUUCUAUGGGGUAAUcGGCaAACCCAUCGGACUUUCGAUCCGAUAA-UCCGGGUUCAAAUCCCGGUAGAAGCA 361604 ***********************************************.9************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (18) ! 1e-14 59.2 0.0 cm 1 72 [] 2585073 2584999 - .. 0.99 no 0.60 NC (((((((,,<<<<___..___.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GC::::AU+::G:AGU GG A:C:: :C:GCCU+UC+AGC:G:AG+ C :GGGUUCGA UCCC: U::::GCA NC_013790.1 2585073 GCUCCGAUGGUGUAGUccGGCcaAUCAUUUCGGCCUUUCGAGCCGAAGA-CUCGGGUUCGAAUCCCGGUCGGAGCA 2584999 ********************9999*************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (19) ! 1.1e-14 59.1 0.0 cm 1 72 [] 2130422 2130349 - .. 1.00 no 0.59 v v NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GC:G:::UAG:: AG GGU A ::C C:A:CCUG CA+G:U:GAG+ CC:GGGUUC A UCCC:G:::C:GCA NC_013790.1 2130422 GCGGUGUUAGUCCAGCcuGGUuAAGACUCUAGCCUGCCACGUUAGAGA-CCCGGGUUCAAAUCCCGGACGCCGCA 2130349 ***************999******************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (20) ! 1.2e-14 58.9 0.0 cm 1 72 [] 546056 545947 - .. 0.98 no 0.61 NC (((((((,,<<<<___.___._>>>>,<<<<<___~~~~~~>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUg*[ 4]*gcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCCGG::U+GC:CAG GGU AG:GCGC::G:CU :C::GAG+UC::GGGUUCGA UCCC::::CCGGCA NC_013790.1 546056 GCCGGGGUGGCUCAGCuGGUuAGAGCGCACGGCUC*[40]*CCGUGAGAUCGCGGGUUCGAAUCCCGCCCCCGGCA 545947 ********************************995...*..*********************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (21) ! 3.9e-14 57.3 0.0 cm 1 72 [] 361915 361844 - .. 1.00 no 0.42 v v NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G:::::AUAG:::A+ GGUA:::C+ C G:CUGU AA:C G AG+ :G :GUUCGA UC: C:U:::::C+ NC_013790.1 361915 GGUUCUAUAGUUUAACaGGUAAAACAACUGGCUGUUAACCGGCAGA-UAGGAGUUCGAAUCUUCUUAGAACCG 361844 **********************************************.9************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (22) ! 5.1e-14 57.0 0.0 cm 1 72 [] 97724 97795 + .. 1.00 no 0.49 NC (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 ::::::AU+::G:A+UGG A:C::+C AG:CU U +A:CU G G+ C:::GGUUCGA UCC:::U::::::A NC_013790.1 97724 AGUCCUAUGGUGUAAUGGCaAUCAUACGAGUCUCUGGAACUUGUGA-CUCCGGUUCGACUCCGGAUAGGACUA 97795 **********************************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (23) ! 6.1e-14 56.7 0.0 cm 1 72 [] 2350717 2350646 - .. 1.00 no 0.68 NC (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCC::::U+::G:AG GG A:C::G:::GCCUGUC+AGC::: G+ C :GGGUUC A UCCC: ::::GGC+ NC_013790.1 2350717 GCCCUGGUGGUGUAGGGGCuAUCAUGUGGGCCUGUCGAGCCCGCGA-CUCGGGUUCAAAUCCCGGCCAGGGCG 2350646 ******************99**************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (24) ! 8e-14 56.3 0.0 cm 1 72 [] 1873887 1873815 - .. 1.00 no 0.64 v v NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::: UAG :CAG GG AG: CG:C::C+UG CA G::G:AGG CC:GGGUUC A UCCC:G :::::CA NC_013790.1 1873887 GGGCUGGUAGCUCAGAuGGGAGAUCGUCGCCUUGGCAUGGCGGAGGCCCCGGGUUCAAAUCCCGGUCAGUCCA 1873815 ***************99******************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (25) ! 1.4e-13 55.6 0.0 cm 1 72 [] 360730 360659 - .. 1.00 no 0.40 NC (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::G::AUA::::A+ GG A::::GC::G:CU ++A:C::GAG+ :: :GUUCGA UC: ::U::C::CA NC_013790.1 360730 GAAGAUAUAGUUUAACGGCaAGAAUGCUUGGCUCCAGACCAAGAGA-UGAGAGUUCGAAUCUUUCUAUCUUCA 360659 **********************************************.9************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (26) ! 3.5e-13 54.3 0.0 cm 1 72 [] 2680310 2680384 + .. 0.99 no 0.52 NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 :::::::UAGC::AG GG A::GCG::AG:CU AA:CU::AG+ C::GGGUUC A UCCC:::::::::+ NC_013790.1 2680310 AGGCUUGUAGCCUAGCuuGGAuAAGGCGUUAGACUCCUAAUCUAAAGACCGCGGGUUCAAAUCCCGCCAAGCCUG 2680384 ***************9999999***************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (27) ! 3.6e-13 54.3 0.0 cm 1 72 [] 2664806 2664732 - .. 1.00 no 0.60 NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 ::C:G::U+G G:AGU GGU A:C CGC::G:CU + AA:C::GAG+ CC:::GUUC A UC:::G::C:G::A NC_013790.1 2664806 AGCAGGGUGGGGUAGUcuGGUgAUCCCGCGGGGCUCAUAACCCCGAGAGCCCUAGUUCAAAUCUAGGCCCUGCUA 2664732 *************************************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (28) ! 3.6e-13 54.3 0.0 cm 1 72 [] 361061 360989 - .. 1.00 no 0.41 NC (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 :: ::AUAGC::A+ GG A::GC+:C:::CU +A:::G:AG+U :GGGUUC A UCCC: U:: :: A NC_013790.1 361061 GGAUCUAUAGCUUAACGGAaAAAGCAUCUAGCUACGGACUAGAAGAUUGUGGGUUCAAAUCCCAUUAGGUCUA 360989 *******************9***************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (29) ! 7.5e-13 53.3 0.0 cm 1 72 [] 2130335 2130262 - .. 1.00 no 0.55 NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GC:G:::U+G:::AGU GGU A:::C : :GCCU+ CAAGC: : + CC:GGGUUCGA UCCC:G:::C:GCA NC_013790.1 2130335 GCAGCUGUGGUAUAGUcuGGUuAUUACUUGGGCCUUCCAAGCCUACAA-CCCGGGUUCGAAUCCCGGCAGCUGCA 2130262 ************************************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (30) ! 7.6e-13 53.3 0.0 cm 1 72 [] 2151672 2151745 + .. 1.00 no 0.65 vv vv NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::C:UAGC:CAGU GG AG:GCGC G:CU U AA:C G GUC :GGGUUC AU+CCC: :G::::C+ NC_013790.1 2151672 GGGCCCGUAGCUCAGUcuGGCAGAGCGCUUGGCUCUUAACCUUGUUGUCGCGGGUUCAAUCCCCGUCGGGCCCG 2151745 ************************************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (31) ! 2.9e-12 51.4 0.0 cm 1 72 [] 319297 319370 + .. 0.99 no 0.62 NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCC::::U+G:G:AG GG A:C:CG:::G:CUG +A:C::: CC:GGGUUC A UCCC:G::::GGCA NC_013790.1 319297 GCCCUGGUGGUGUAGCuuGGAuAACACGUGGGACUGCGGAUCCCAUUC-CCCGGGUUCAAAUCCCGGCCAGGGCA 319370 ***************9999999************************99.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (32) ! 3.7e-12 51.1 0.0 cm 1 72 [] 361753 361679 - .. 0.98 no 0.55 v v NC (((((((,,<<<<___..___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G :::::U+GC AGU G U A GCG:C:G:CU+U AA:C:G:AG+UC: GGGUUC A UCCC :::::: CA NC_013790.1 361753 GGGCCUGUGGCUAAGUcuGAUcAAGGCGUCCGGCUUUUAACCGGAAGAUCAGGGGUUCAAAUCCCUUCAGGCUCA 361679 ****************9888899**************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (33) ! 3.8e-12 51.1 0.0 cm 1 72 [] 360983 360912 - .. 1.00 no 0.50 v v NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GC:::::UA :G:A+U GG A:C: C ::CCU+ CAAG:: GA + C:GGGUUCGA UCCC:G:::::GCA NC_013790.1 360983 GCUUUAGUACUGUAAUuGGCAACACCCGCCCCUUCCAAGGGUGAAA-UCUGGGUUCGAAUCCCAGCUAAAGCA 360912 **********************************************.9************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (34) ! 5.9e-12 50.5 0.0 cm 1 72 [] 361456 361383 - .. 1.00 no 0.50 v v NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 :::::::U+GC: AG GGUA :GCGC::G CUG+ A C::G G+UC :GGGUUC A UCCC: :::::::A NC_013790.1 361456 UGGUCUGUGGCCAAGCauGGUAAGGCGCUUGUCUGAUAUGCAAGUGAUCGAGGGUUCAAAUCCCUUCAGACCAA 361383 ***************999******************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (35) ! 7.4e-12 50.1 0.0 cm 1 72 [] 362798 362727 - .. 1.00 no 0.51 v v v v NC (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::::UAGC: AG GG A :GCG:CAG CUG+++A CUG: +UC:::GGUUC A UCC:::::::::CA NC_013790.1 362798 GGGGCAUUAGCUAAGCGGGAAAGCGACAGUCUGAAGAUCUGUUCAUCGCUGGUUCAAAUCCAGCAUGUCCCA 362727 ************************************************************************ PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (36) ! 8.7e-12 49.9 0.0 cm 1 72 [] 917722 917793 + .. 1.00 no 0.61 v v NC (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 :::::C:U+: G:AGUGGU A:C : C G:CU+U +A:C GAG+ C G:GGUUCGA UCC:C :G:::::A NC_013790.1 917722 AGUCCCGUGGGGUAGUGGUaAUCCUUCUAGGCUUUGGACCCGGAGA-CGGCGGUUCGACUCCGCUCGGGACUA 917793 **********************************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (37) ! 1.1e-11 49.7 0.0 cm 1 72 [] 2583869 2583798 - .. 0.99 no 0.51 NC (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCC:::AUAGC::AG GG ::GCG:::G:CUG ++A:C::: C: G:GUUC A UC:C :U:::GGC NC_013790.1 2583869 GCCAAGAUAGCUUAGAGGCGAAGCGGUUGGCUGCAGACCAAUUACACGGGAGUUCAAAUCUCUCUCUUGGCU 2583798 *******************9**************************************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (38) ! 1.3e-11 49.4 0.0 cm 1 72 [] 362324 362252 - .. 1.00 no 0.51 NC (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 ::::::AU+::G:A+ GG A:C:: CC:G:CU+U +A:C:GGAG+ ::::GUUCGA C::::U::::::A NC_013790.1 362324 AGUUCUAUGGUGUAACuGGCaAUCAUUCCGGGCUUUGGACCCGGAGA-UUCCCGUUCGAGACGGGAUAGAACUA 362252 ***********************************************.9************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (39) ! 1.3e-11 49.3 0.0 cm 1 72 [] 360811 360740 - .. 0.99 no 0.42 NC (((((((,,<<<<___.____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GC: :::U+ :G:A+U GG A:C: +C::::CU+ AA::::GA C:GGGUUC A UCCC:G::: :GC NC_013790.1 360811 GCUUUAGUGUUGUAAUuGGAAACAAACACCUCUUCUAAAGGUGAAU-UCUGGGUUCAAGUCCCAGCUAGAGCU 360740 ********************************************66.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (40) ! 4.3e-11 47.7 0.0 cm 1 72 [] 1160526 1160609 + .. 0.97 no 0.60 NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,..........,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGg..........UCCgggGUUCGAUUCcccGUgccgGca 72 GCCG::AUAG ::AG GGUA:: CGC::G:CUG +AA:C::G G+ UCC:GGGUUC A UCCC:GU::CGGC+ NC_013790.1 1160526 GCCGAGAUAGUCUAGCcuGGUAAGGCGCGGGACUGGAAAUCCCGUGAgggaaaccucUCCUGGGUUCAAAUCCCAGUCUCGGCG 1160609 ***************999***************************9878888888889************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (41) ! 9.8e-11 46.6 0.0 cm 1 72 [] 362403 362331 - .. 1.00 no 0.49 v v NC (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G:::: :UAG:G:AGUGGU A:C:C :::GC+U+ +AGC:::A + C :::GUUC A UC::: : ::::CA NC_013790.1 362403 GGGAUUGUAGUGUAGUGGUcuAGCACCGUCGCUUUGGGAGCGACAAA-CUCAAGUUCAAAUCUUGGCUAUCCCA 362331 ***********************************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (42) ! 1.1e-10 46.5 0.0 cm 1 72 [] 2327124 2327042 - .. 0.93 no 0.63 NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,.,.........,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGg.U.........CCgggGUUCGAUUCcccGUgccgGca 72 GCCG::AUAG ::AG GGUA:: CGC::G:CU+ +AA:C::G GG CC:GGGUUC A UCCC:GU::CGGC+ NC_013790.1 2327124 GCCGAGAUAGUCUAGCcuGGUAAGGCGCGGGACUUGAAAUCCCGUGGg-uaccccccgCCUGGGUUCAAAUCCCAGUCUCGGCG 2327042 ***************999***************************973.455555555************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (43) ! 1.2e-10 46.4 0.0 cm 1 72 [] 995344 995263 - .. 0.93 no 0.49 v v NC (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,........,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGg........UCCgggGUUCGAUUCcccGUgccgGca 72 :::G:CAUAGCG AG GGU A CGCG:CAG:CU +++A:CUG: G+ UC:GGGGUUCGA UCCCC:UG:C:::A NC_013790.1 995344 AGAGACAUAGCGAAGCGGUcaAACGCGGCAGACUCAAGAUCUGUUGAuuaguucuUCAGGGGUUCGAAUCCCCUUGUCUCUA 995263 **********************************************9444444445************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (44) ! 2.3e-10 45.5 0.0 cm 1 72 [] 256772 256696 - .. 0.95 no 0.57 v v NC (((((((,,<<<<___..___.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_____.__>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGA.UUCcccGUgccgGca 72 G :::AUAG:::AGU GG A:::CG:::G:CU+ +A:C:::AGGUC:GGGGUUC A U+CCCC:U::: C NC_013790.1 256772 GGGCCUAUAGUCUAGUcaGGAuuAUGACGUGGGACUUCGGAUCCCAAGGUCGGGGGUUCAAaUCCCCCCUAGGGUCC 256696 *****************988889************************************8626688999******** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (45) ! 2.5e-10 45.3 0.0 cm 1 72 [] 2584830 2584758 - .. 1.00 no 0.64 NC (((((((,,<<<<___.___._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU.GGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 GCCGG :UA: G:AG GGU A:C :+C :G:CUGU +A:C: G G+ C :G GUUC A UC C: : CCGGC NC_013790.1 2584830 GCCGGGGUAGGGUAGGcGGUcAUCCUACGGGACUGUGGAUCCUGUGA-CUCGGGUUCAAAUCUCGGCUCCGGCC 2584758 ***********************************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (46) ! 6.1e-10 44.1 0.0 cm 1 72 [] 2351071 2350997 - .. 0.99 no 0.59 NC (((((((,,<<<<___..___.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G::::CAUA: G:AG GGU A:C : : :GC+U+ +AGC: :AG+ C ::GGUUC A UCC:: UG::::CA NC_013790.1 2351071 GGGACCAUAGGGUAGCuuGGUcgAUCCUUUGGGCUUUGGGAGCCUGAGA-CUCCGGUUCAAAUCCGGGUGGUCCCA 2350997 ***************999*******************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (47) ! 6.5e-10 44.0 0.0 cm 1 72 [] 362552 362482 - .. 0.99 no 0.55 v v NC (((((((,,<<<<_______>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 ::C G::UAGC: AGUGGU :GCG:C:G:CUGU++A:C:G: + : GGGUUCGA UCCC :::C G::A NC_013790.1 362552 CUCUGUGUAGCAAAGUGGUUAUGCGGCGGUCUGUAGAACCGUUUA-UGGGGGUUCGAAUCCCUCCGCGGAGA 362482 *******************679***********************.9************************* PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (48) ! 5.2e-09 41.2 0.0 cm 1 72 [] 1064775 1064858 + .. 0.97 no 0.63 v v NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,..........,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgU..........CCgggGUUCGAUUCcccGUgccgGca 72 G CGG:AU+GC: AG GGUA :GCG:C:G:CUG AA:C:G: G+U CCGGGGUUC A UCCCCGU:CCG C+ NC_013790.1 1064775 GUCGGGAUGGCCCAGCcuGGUACGGCGUCGGACUGCUAAUCCGAUGAUcaauagaucgCCGGGGUUCAAAUCCCCGUCCCGGCG 1064858 ***************999****************************988888888899************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (49) ! 1.2e-08 40.0 0.0 cm 1 72 [] 361222 361150 - .. 0.98 no 0.45 NC (((((((,,<<<<.______._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgc.AgUGGu.AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G: ::::U+::G: A+UGG A:C::+C:AG CUGU +A CU:G GG ::GGGUUC A UCCC:::::: :C NC_013790.1 361222 GAUGCAUUGGUGUuAAUGGCuAGCAUACAAGUCUGUGGAGCUUGUGG-AAAGGGUUCAAAUCCCUUAUGUGUCC 361150 ************85778**99**************************.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (50) ! 1.2e-08 40.0 0.0 cm 1 72 [] 361369 361297 - .. 0.99 no 0.60 NC (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 G C::::UA::::AGUGG A:::: C: G:+ GUCA :C :G + CC:GGGUUCGA UCCC:G::::G C+ NC_013790.1 361369 GUCUCUGUAGUAUAGUGGCcuAGUAUCCAUGGUGGUCAGCCGUGGUA-CCCGGGUUCGAAUCCCGGCGGAGGCG 361297 ******************99************************999.************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (51) ! 4.8e-08 38.1 0.0 cm 1 72 [] 361596 361513 - .. 0.84 no 0.61 NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,..,.........,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAG..g.........UCCgggGUUCGAUUCcccGUgccgGca 72 G:CG:::U+GC::AG GGUA::GCG:::G CUG AA C::: G UC::GGGUUC A UCCC:::::CG:C+ NC_013790.1 361596 GGCGUGGUGGCCUAGCucGGUAGGGCGGAGGGCUGCUAAUCCUCUGcg-auaaaacgcUCAUGGGUUCAAAUCCCAUCCACGCCG 361513 **************************9888888888888888887522.2333333339************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (52) ! 3.2e-07 35.5 0.0 cm 1 72 [] 1913310 1913227 - .. 0.96 no 0.64 v v NC (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,..........,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGg..........UCCgggGUUCGAUUCcccGUgccgGca 72 GC:GG::U+G : AG GGU A : CGC:AG:+UG+ + :CU:G GG UC :GGGUUCGAUUCCC: ::CC:GCA NC_013790.1 1913310 GCAGGGGUGGUCGAGCGGUcaAAGGCGCUAGGUUGAGGGCCUAGUGGguuagucccuUCGCGGGUUCGAUUCCCGUCCCCUGCA 1913227 **********************************************888888888889************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (53) ! 2.6e-06 32.7 0.0 cm 1 72 [] 363464 363381 - .. 0.96 no 0.51 v v NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,..........,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGg..........UCCgggGUUCGAUUCcccGUgccgGca 72 ::C:G::UAGC AG GGUA GC+C::G:CU++++A:C::G G+ UC::GGGUUC A UCCC::::C:G::A NC_013790.1 363464 AGCCGAGUAGCUAAGCuuGGUAAGGCACUGGACUUAAGAUCCAGGGAguuagucuccUCAUGGGUUCAAAUCCCGUCUCGGCUA 363381 ***************999**************************99888888888889************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (54) ! 3e-06 32.5 0.0 cm 1 72 [] 2584954 2584872 - .. 0.97 no 0.58 v v NC (((((((,,<<<<______.._>>>>,<<<<<_______>>>>>,,,,.........,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgUGGu..AgcgCgccagccUgucAagcuggAGgU.........CCgggGUUCGAUUCcccGUgccgGca 72 GC::G :U+ C: AG GG A :G G:CAG:CU++ +A:CUG: G+U CC:GGGUUCGA UCCC:G: C::GCA NC_013790.1 2584954 GCGAGGGUGUCCGAGAGGCcaAAGGAGACAGGCUUAGGACCUGUUGAUgcagaucuaCCAGGGUUCGAAUCCCUGCUCUCGCA 2584872 ******************9999************************98888888888************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (55) ? 0.027 20.0 0.0 cm 1 72 [] 363803 363716 - .. 0.71 no 0.50 vvvvv vvvvv NC (((((((,,<~~~~~~>,<<<<<_~~~~~~>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAG*[13]*Cgccagcc*[ 6]*gcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 ::C:G::UAG C +C + +UC::GGGUUC A UCCC::::C:G::A NC_013790.1 363803 AGCUGUGUAG*[22]*C---GGAC*[17]*-AGUCUCAUCAUGGGUUCAAAUCCCAUCGCAGCUA 363716 ********96...5..3...3333...5...34456679************************** PP >> NC_013790.1 Methanobrevibacter ruminantium M1 chromosome, complete genome rank E-value score bias mdl mdl from mdl to seq from seq to acc trunc gc ---- --------- ------ ----- --- -------- -------- ----------- ----------- ---- ----- ---- (56) ? 3.4 13.4 0.0 cm 1 72 [] 984373 984304 - .. 0.95 no 0.53 vvv vv vv vvv NC (((((((,,<<<<___..____>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))): CS tRNA5 1 gCcggcAUAGcgcAgU..GGuAgcgCgccagccUgucAagcuggAGgUCCgggGUUCGAUUCcccGUgccgGca 72 : ::GC U+:C:CA U GG AG:G:GC G:+U U AA:C G G CG: G UC A UC :CG :: :A NC_013790.1 984373 CUGAGCGUGGCUCACUauGGCAGAGUGCUUGGUUCUUAACCUUGUUG-UCGAGGGUCCAAUCUUCG---UCGGA 984304 **************9999*****************************.899999999999999999...799** PP Internal CM pipeline statistics summary: ---------------------------------------- Query model(s): 1 (72 consensus positions) Target sequences: 1 (5874406 residues searched) Target sequences re-searched for truncated hits: 1 (360 residues re-searched) Windows passing local HMM SSV filter: 11197 (0.2108); expected (0.35) Windows passing local HMM Viterbi filter: (off) Windows passing local HMM Viterbi bias filter: (off) Windows passing local HMM Forward filter: 140 (0.002747); expected (0.005) Windows passing local HMM Forward bias filter: 139 (0.002728); expected (0.005) Windows passing glocal HMM Forward filter: 88 (0.001973); expected (0.005) Windows passing glocal HMM Forward bias filter: 88 (0.001973); expected (0.005) Envelopes passing glocal HMM envelope defn filter: 101 (0.001358); expected (0.005) Envelopes passing local CM CYK filter: 60 (0.0007629); expected (0.0001) Total CM hits reported: 56 (0.0007205); includes 0 truncated hit(s) # CPU time: 2.66u 0.04s 00:00:02.70 Elapsed: 00:00:01.77 // [ok]