against a sequence database (cmsearch) infernal infernal gnu_coreutils &1 ; ## 1. replace all lines starting # (comment lines) ## 2. replace the first 18 spaces with tabs, 18th field is a free text field (can contain spaces) sed -e 's/#.*$//' -e '/^$/d' -e 's/ /\t/g' -e 's/\t/ /18g' \$temp_tabular_output > $outfile ]]> A is True `_. ]]> 10.1093/bioinformatics/btt509 @ARTICLE{bgruening_galaxytools, Author = {Björn Grüning, Cameron Smith, Torsten Houwaart, Nicola Soranzo, Eric Rasche}, keywords = {bioinformatics, ngs, galaxy, cheminformatics, rna}, title = {{Galaxy Tools - A collection of bioinformatics and cheminformatics tools for the Galaxy environment}}, url = {https://github.com/bgruening/galaxytools} }