Mercurial > repos > bgruening > interproscan
comparison interproscan.xml @ 6:0cd163d805e3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 959550b5431b15acf3609f536efc864fd0845b3c"
author | iuc |
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date | Wed, 24 Nov 2021 17:44:31 +0000 |
parents | 2e1cf7d85dbc |
children | 1207025b9b9c |
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5:2e1cf7d85dbc | 6:0cd163d805e3 |
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110 </param> | 110 </param> |
111 </inputs> | 111 </inputs> |
112 | 112 |
113 <outputs> | 113 <outputs> |
114 <data format="tabular" name="outfile_tsv" from_work_dir="output.tsv" label="InterProScan on ${on_string} (tsv)"> | 114 <data format="tabular" name="outfile_tsv" from_work_dir="output.tsv" label="InterProScan on ${on_string} (tsv)"> |
115 <filter>oformat and 'TSV' in outputs</filter> | 115 <filter>oformat and 'TSV' in oformat</filter> |
116 </data> | 116 </data> |
117 <data format="xml" name="outfile_xml" from_work_dir="output.xml" label="InterProScan on ${on_string} (xml)"> | 117 <data format="xml" name="outfile_xml" from_work_dir="output.xml" label="InterProScan on ${on_string} (xml)"> |
118 <filter>oformat and 'XML' in outputs</filter> | 118 <filter>oformat and 'XML' in oformat</filter> |
119 </data> | 119 </data> |
120 <data format="gff3" name="outfile_gff3" from_work_dir="output.gff3" label="InterProScan on ${on_string} (gff3)"> | 120 <data format="gff3" name="outfile_gff3" from_work_dir="output.gff3" label="InterProScan on ${on_string} (gff3)"> |
121 <filter>oformat and 'GFF3' in outputs</filter> | 121 <filter>oformat and 'GFF3' in oformat</filter> |
122 </data> | 122 </data> |
123 <data format="json" name="outfile_json" from_work_dir="output.json" label="InterProScan on ${on_string} (json)"> | 123 <data format="json" name="outfile_json" from_work_dir="output.json" label="InterProScan on ${on_string} (json)"> |
124 <filter>oformat and 'JSON' in outputs</filter> | 124 <filter>oformat and 'JSON' in oformat</filter> |
125 </data> | 125 </data> |
126 </outputs> | 126 </outputs> |
127 | 127 |
128 <tests> | 128 <tests> |
129 <test> | 129 <test expect_num_outputs="1"> |
130 <param name="input" value="prots.fa" /> | 130 <param name="input" value="prots.fa" /> |
131 <param name="seqtype" value="p" /> | 131 <param name="seqtype" value="p" /> |
132 <param name="database" value="5.52-86.0" /> | 132 <param name="database" value="5.52-86.0" /> |
133 <param name="applications" value="MobiDBLite" /> | 133 <param name="applications" value="MobiDBLite" /> |
134 <param name="oformat" value="TSV" /> | 134 <param name="oformat" value="TSV" /> |
139 <has_text text="FUN_000012-T1" /> | 139 <has_text text="FUN_000012-T1" /> |
140 <has_text text="01beedc2fbf8012cba37f0c0d39aa071" /> | 140 <has_text text="01beedc2fbf8012cba37f0c0d39aa071" /> |
141 </assert_contents> | 141 </assert_contents> |
142 </output> | 142 </output> |
143 </test> | 143 </test> |
144 <test> | 144 <test expect_num_outputs="4"> |
145 <param name="input" value="prots.fa" /> | 145 <param name="input" value="prots.fa" /> |
146 <param name="seqtype" value="p" /> | 146 <param name="seqtype" value="p" /> |
147 <param name="database" value="5.52-86.0" /> | 147 <param name="database" value="5.52-86.0" /> |
148 <param name="applications" value="MobiDBLite" /> | 148 <param name="applications" value="MobiDBLite" /> |
149 <param name="oformat" value="TSV,GFF3,XML,JSON" /> | 149 <param name="oformat" value="TSV,GFF3,XML,JSON" /> |
176 <has_text text="disorder_prediction" /> | 176 <has_text text="disorder_prediction" /> |
177 <has_text text="Polyampholyte" /> | 177 <has_text text="Polyampholyte" /> |
178 </assert_contents> | 178 </assert_contents> |
179 </output> | 179 </output> |
180 </test> | 180 </test> |
181 <test> | 181 <test expect_num_outputs="4"> |
182 <param name="input" value="transcripts.fa" /> | 182 <param name="input" value="transcripts.fa" /> |
183 <param name="seqtype" value="n" /> | 183 <param name="seqtype" value="n" /> |
184 <param name="database" value="5.52-86.0" /> | 184 <param name="database" value="5.52-86.0" /> |
185 <param name="applications" value="MobiDBLite" /> | 185 <param name="applications" value="MobiDBLite" /> |
186 <param name="oformat" value="TSV,GFF3,XML,JSON" /> | 186 <param name="oformat" value="TSV,GFF3,XML,JSON" /> |
213 <has_text text="disorder_prediction" /> | 213 <has_text text="disorder_prediction" /> |
214 <has_text text="Polyampholyte" /> | 214 <has_text text="Polyampholyte" /> |
215 </assert_contents> | 215 </assert_contents> |
216 </output> | 216 </output> |
217 </test> | 217 </test> |
218 <test expect_failure="true"> | 218 <test expect_failure="true" expect_num_outputs="1"> |
219 <param name="input" value="prots.fa" /> | 219 <param name="input" value="prots.fa" /> |
220 <param name="seqtype" value="p" /> | 220 <param name="seqtype" value="p" /> |
221 <param name="database" value="5.52-86.0" /> | 221 <param name="database" value="5.52-86.0" /> |
222 <param name="applications" value="MobiDBLite" /> | 222 <param name="applications" value="MobiDBLite" /> |
223 <conditional name="licensed"> | 223 <conditional name="licensed"> |