Mercurial > repos > bgruening > interproscan
comparison interproscan.xml @ 5:2e1cf7d85dbc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 8308746e12723b6a9e56f2ec524070673d74d6cc"
| author | iuc |
|---|---|
| date | Fri, 19 Nov 2021 12:08:10 +0000 |
| parents | fcedfe919603 |
| children | 0cd163d805e3 |
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| 4:fcedfe919603 | 5:2e1cf7d85dbc |
|---|---|
| 12 <version_command>interproscan.sh --version</version_command> | 12 <version_command>interproscan.sh --version</version_command> |
| 13 <command><![CDATA[ | 13 <command><![CDATA[ |
| 14 ## Adapt properties file to use data from data table | 14 ## Adapt properties file to use data from data table |
| 15 mkdir -p \$HOME/.interproscan-5 | 15 mkdir -p \$HOME/.interproscan-5 |
| 16 && | 16 && |
| 17 sed 's|^\(data.directory=\).*$|\1${database.fields.path}|' \$(dirname \$(readlink -f \$(command -v interproscan.sh)))/interproscan.properties > \$HOME/.interproscan-5/interproscan.properties | 17 sed 's|^\(data.directory=\).*$|\1${database.fields.path}/data|' \$(dirname \$(readlink -f \$(command -v interproscan.sh)))/interproscan.properties > \$HOME/.interproscan-5/interproscan.properties |
| 18 && | 18 && |
| 19 | 19 |
| 20 ## Now run interproscan | 20 ## Now run interproscan |
| 21 interproscan.sh | 21 interproscan.sh |
| 22 | 22 |