# HG changeset patch
# User bgruening
# Date 1373482431 14400
# Node ID 52f20362d488c2ce66665aca5f42b12bae243084
# Parent  eb12db502d3c9b78f26f986d478ca20a67d41b66
Again help updates.

diff -r eb12db502d3c -r 52f20362d488 interproscan.xml
--- a/interproscan.xml	Wed Jul 10 14:34:28 2013 -0400
+++ b/interproscan.xml	Wed Jul 10 14:53:51 2013 -0400
@@ -83,26 +83,25 @@
 **Output**
 
 Example for the raw format.
-The output will consist of a file in Interproscan raw format, a tabular file in galaxy with 14 columns. 
-This can be use to upload the data into a relational database or concatenation of different runs.
+The output will consist of a tabular file with 14 columns and can be easily concatenated or filtered.
 
 ====== ================================================================ ======================================================================
 column example                                                          description
 ====== ================================================================ ======================================================================
-c1     NF00181542                                                       the id of the input sequence
-c2     27A9BBAC0587AB84                                                 the crc64 (checksum) of the protein sequence (supposed to be unique)
-c3     272                                                              the length of the sequence (in AA)
-c4     HMMPIR                                                           the anaysis method launched. 
-c5     PIRSF001424                                                      the database members entry for this match
-c6     Prephenate dehydratase                                           the database member description for the entry
-c7     1                                                                the start of the domain match 
-c8     270                                                              the end of the domain match
-c9     6.5e-141                                                         the evalue of the match (reported by member database method) 
-c10    T                                                                the status of the match (T: true, ?: unknown) 
-c11    06-Aug-2005                                                      the date of the run. 
-c12    IPR008237                                                        the corresponding InterPro entry (if iprlookup requested by the user)
-c13    Prephenate dehydratase with ACT region                           the description of the InterPro entry
-c14    Molecular Function:prephenate dehydratase activity (GO:0004664)  the GO (gene ontology) description for the InterPro entry 
+c1     NF00181542                                                       id of the input sequence
+c2     27A9BBAC0587AB84                                                 crc64 (checksum) of the protein sequence (supposed to be unique)
+c3     272                                                              length of the sequence (in AA)
+c4     HMMPIR                                                           anaysis method launched. 
+c5     PIRSF001424                                                      database members entry for this match
+c6     Prephenate dehydratase                                           database member description for the entry
+c7     1                                                                start of the domain match 
+c8     270                                                              end of the domain match
+c9     6.5e-141                                                         evalue of the match (reported by member database method) 
+c10    T                                                                status of the match (T: true, ?: unknown) 
+c11    06-Aug-2005                                                      date of the run. 
+c12    IPR008237                                                        corresponding InterPro entry (if iprlookup requested by the user)
+c13    Prephenate dehydratase with ACT region                           description of the InterPro entry
+c14    Molecular Function:prephenate dehydratase activity (GO:0004664)  GO (gene ontology) description for the InterPro entry 
 ====== ================================================================ ======================================================================
 
 **Database updates**