Mercurial > repos > bgruening > interproscan

changeset 7:1207025b9b9c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 3e5aef1ff8f33003ae2314b8df52c4f4187c37ef"
author iuc
date Tue, 18 Jan 2022 12:08:42 +0000
parents 0cd163d805e3
children c762a1cd357e
files interproscan.xml macros.xml test-data/interproscan.loc
diffstat 3 files changed, 12 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/interproscan.xml	Wed Nov 24 17:44:31 2021 +0000
+++ b/interproscan.xml	Tue Jan 18 12:08:42 2022 +0000
@@ -129,7 +129,7 @@
         <test expect_num_outputs="1">
             <param name="input" value="prots.fa" />
             <param name="seqtype" value="p" />
-            <param name="database" value="5.52-86.0" />
+            <param name="database" value="@TOOL_VERSION@" />
             <param name="applications" value="MobiDBLite" />
             <param name="oformat" value="TSV" />
             <output name="outfile_tsv">
@@ -144,7 +144,7 @@
         <test expect_num_outputs="4">
             <param name="input" value="prots.fa" />
             <param name="seqtype" value="p" />
-            <param name="database" value="5.52-86.0" />
+            <param name="database" value="@TOOL_VERSION@" />
             <param name="applications" value="MobiDBLite" />
             <param name="oformat" value="TSV,GFF3,XML,JSON" />
             <output name="outfile_tsv">
@@ -181,7 +181,7 @@
         <test expect_num_outputs="4">
             <param name="input" value="transcripts.fa" />
             <param name="seqtype" value="n" />
-            <param name="database" value="5.52-86.0" />
+            <param name="database" value="@TOOL_VERSION@" />
             <param name="applications" value="MobiDBLite" />
             <param name="oformat" value="TSV,GFF3,XML,JSON" />
             <output name="outfile_tsv">
@@ -218,7 +218,7 @@
         <test expect_failure="true" expect_num_outputs="1">
             <param name="input" value="prots.fa" />
             <param name="seqtype" value="p" />
-            <param name="database" value="5.52-86.0" />
+            <param name="database" value="@TOOL_VERSION@" />
             <param name="applications" value="MobiDBLite" />
             <conditional name="licensed">
                 <param name="use" value="true" />
--- a/macros.xml	Wed Nov 24 17:44:31 2021 +0000
+++ b/macros.xml	Tue Jan 18 12:08:42 2022 +0000
@@ -1,7 +1,12 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">5.52-86.0</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <!--
+        The version must use a "-" instead of a "_"
+        Conda understands both notations, but the Galaxy tool requires the use of "-".
+        The version should also be bumped in test-data/interproscan.loc
+    -->
+    <token name="@TOOL_VERSION@">5.54-87.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
 
     <xml name="citations">
         <citations>
--- a/test-data/interproscan.loc	Wed Nov 24 17:44:31 2021 +0000
+++ b/test-data/interproscan.loc	Tue Jan 18 12:08:42 2022 +0000
@@ -5,4 +5,4 @@
 # value	description	interproscan_version	path
 #
 # for example
-5.52-86.0	InterProScan 5.52-86.0	5.52-86.0	${__HERE__}/fake_db/
+5.54-87.0	InterProScan 5.54-87.0	5.54-87.0	${__HERE__}/fake_db/