Mercurial > repos > bgruening > interproscan
changeset 12:74810db257cc draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 01e8e726d711c0685f46d3146e4fe0f2a1306036
| author | iuc |
|---|---|
| date | Wed, 07 Dec 2022 13:41:49 +0000 |
| parents | 98cafcbd2578 |
| children | |
| files | README.md interproscan.xml macros.xml test-data/interproscan.loc |
| diffstat | 4 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/README.md Fri Apr 29 20:14:21 2022 +0000 +++ b/README.md Wed Dec 07 13:41:49 2022 +0000 @@ -17,7 +17,7 @@ - You agree with each software license - InterProScan was installed using Conda in the `IPRSCAN_DIR` directory -- You have run the InterProScan data manager which placed the data files in the `IPRSCAN_DATA_DIR` directory (e.g. `/data/db/data_managers/interproscan/5.55-88.0/`) +- You have run the InterProScan data manager which placed the data files in the `IPRSCAN_DATA_DIR` directory (e.g. `/data/db/data_managers/interproscan/5.59-91.0/`) Everytime you upgrade InterProScan, you'll need to do the same things: modify the `${IPRSCAN_DIR}/share/InterProScan/interproscan.properties` file + add the SMART file.
--- a/interproscan.xml Fri Apr 29 20:14:21 2022 +0000 +++ b/interproscan.xml Wed Dec 07 13:41:49 2022 +0000 @@ -4,7 +4,7 @@ <import>macros.xml</import> </macros> <xrefs> - <xref type="bio.tools">interproscan_4</xref> + <xref type="bio.tools">interproscan_ebi</xref> </xrefs> <requirements> <requirement type="package" version="@TOOL_VERSION@">interproscan</requirement> @@ -64,6 +64,7 @@ <param name="applications" type="select" multiple="True" label="Applications to run" help="Select your program"> <option value="TIGRFAM" selected="true">TIGRFAM: protein families based on hidden Markov models (HMMs)</option> + <option value="FunFam" selected="true">FunFam: Prediction of functional annotations for novel, uncharacterized sequences.</option> <option value="SFLD" selected="true">SFLD: a database of protein families based on hidden Markov models (HMMs)</option> <option value="SUPERFAMILY" selected="true">SUPERFAMILY: database of structural and functional annotation for all proteins and genomes</option> <option value="PANTHER" selected="true">PANTHER: Protein ANalysis THrough Evolutionary Relationships</option>
--- a/macros.xml Fri Apr 29 20:14:21 2022 +0000 +++ b/macros.xml Wed Dec 07 13:41:49 2022 +0000 @@ -5,7 +5,7 @@ Conda understands both notations, but the Galaxy tool requires the use of "-". The version should also be bumped in test-data/interproscan.loc --> - <token name="@TOOL_VERSION@">5.55-88.0</token> + <token name="@TOOL_VERSION@">5.59-91.0</token> <token name="@VERSION_SUFFIX@">3</token> <xml name="citations">
--- a/test-data/interproscan.loc Fri Apr 29 20:14:21 2022 +0000 +++ b/test-data/interproscan.loc Wed Dec 07 13:41:49 2022 +0000 @@ -5,4 +5,4 @@ # value description interproscan_version path # # for example -5.55-88.0 InterProScan 5.55-88.0 5.55-88.0 ${__HERE__}/fake_db/ +5.59-91.0 InterProScan 5.59-91.0 5.59-91.0 ${__HERE__}/fake_db/