Mercurial > repos > bgruening > jbrowse2
comparison test-data/maf/merlinlastz.maf @ 0:53c2be00bb6f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 0a86c88a95b0d1cc49d84544136de6556b95320f
| author | bgruening |
|---|---|
| date | Wed, 05 Jun 2024 08:15:49 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:53c2be00bb6f |
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| 1 ##maf version=1 scoring=lastz.v1.04.22 | |
| 2 # lastz.v1.04.22 --strand=both --ambiguous=iupac --traceback=160M --format=maf --action:target=multiple | |
| 3 # | |
| 4 # hsp_threshold = 3000 | |
| 5 # gapped_threshold = 3000 | |
| 6 # x_drop = 910 | |
| 7 # y_drop = 9400 | |
| 8 # gap_open_penalty = 400 | |
| 9 # gap_extend_penalty = 30 | |
| 10 # A C G T | |
| 11 # A 91 -114 -31 -123 | |
| 12 # C -114 100 -125 -31 | |
| 13 # G -31 -125 100 -114 | |
| 14 # T -123 -31 -114 91 | |
| 15 a score=5703 | |
| 16 s Merlin.Merlin 1320 60 + 172788 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT | |
| 17 s Merlin1.Merlin 0 60 + 60 ATGTAAGCTCAGGAGCTCCACACGCAACAGGAACACAACCTGTGAACATTATCACAGTAT | |
| 18 | |
| 19 a score=5595 | |
| 20 s Merlin.Merlin 4020 60 + 172788 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT | |
| 21 s Merlin2.Merlin 0 60 + 60 ATGAATTTATCAGTCCAATACTTAAAATGAATACGAAGTAAATCTATGCCTAATACTAAT | |
| 22 | |
| 23 a score=5667 | |
| 24 s Merlin.Merlin 5220 60 + 172788 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT | |
| 25 s Merlin3.Merlin 0 60 + 60 TAATCAACGTGTGATGCTTCAAGCCAAGCTTAGGAATAGAAATGGTTTTGCCATTGACTT | |
| 26 | |
| 27 a score=5640 | |
| 28 s Merlin.Merlin 7740 60 + 172788 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT | |
| 29 s Merlin4.Merlin 0 60 + 60 AAAAGCTTATTGCTTAAGCCTACAGTTAAACTCGCTATTCCAGTTAAATGCGATAAATGT | |
| 30 | |
| 31 a score=5649 | |
| 32 s Merlin.Merlin 9720 60 + 172788 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG | |
| 33 s Merlin5.Merlin 0 60 + 60 TTTTCTTTGCTAATTTAACACCAAGAGCTGCAATCCATTGGTTTCTTCGTTTATATCCTG | |
| 34 | |
| 35 a score=5658 | |
| 36 s Merlin.Merlin 10380 60 + 172788 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA | |
| 37 s Merlin6.Merlin 0 60 + 60 ATACTGCATCCTTTTGATACCAATGCGGTTCAATTTGAGTGTTACCAGAGTATATCTTGA |