Mercurial > repos > bgruening > keras_model_config
diff keras_model_config.xml @ 1:0fd7d8e90e2a draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
| author | bgruening |
|---|---|
| date | Fri, 13 Sep 2019 12:19:45 -0400 |
| parents | 1046cf73236b |
| children | 4471d2b2de79 |
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--- a/keras_model_config.xml Fri Aug 09 07:14:22 2019 -0400 +++ b/keras_model_config.xml Fri Sep 13 12:19:45 2019 -0400 @@ -168,29 +168,35 @@ <when value="LocallyConnected2D"> <expand macro="layer_LocallyConnected2D"/> </when> - <when value="RNN"> - </when> - <when value="Masking"> - </when> <when value="SimpleRNN"> + <expand macro="layer_SimpleRNN"/> </when> <when value="GRU"> + <expand macro="layer_GRU"/> </when> <when value="LSTM"> + <expand macro="layer_LSTM"/> </when> <when value="ConvLSTM2D"> + <expand macro="layer_ConvLSTM2D"/> </when> <when value="ConvLSTM2DCell"> + <expand macro="layer_ConvLSTM2DCell"/> </when> <when value="SimpleRNNCell"> + <expand macro="layer_SimpleRNNCell"/> </when> <when value="GRUCell"> + <expand macro="layer_GRUCell"/> </when> <when value="LSTMCell"> + <expand macro="layer_LSTMCell"/> </when> <when value="CuDNNGRU"> + <expand macro="layer_CuDNNGRU"/> </when> <when value="CuDNNLSTM"> + <expand macro="layer_CuDNNLSTM"/> </when> <when value="Embedding"> <expand macro="layer_Embedding"/> @@ -214,16 +220,16 @@ <expand macro="layer_ReLU"/> </when> <when value="BatchNormalization"> - <expand macro="layer_Embedding"/> + <expand macro="layer_BatchNormalization"/> </when> <when value="GaussianNoise"> - <expand macro="layer_Embedding"/> + <expand macro="layer_GaussianNoise"/> </when> <when value="GaussianDropout"> - <expand macro="layer_Embedding"/> + <expand macro="layer_GaussianDropout"/> </when> <when value="AlphaDropout"> - <expand macro="layer_Embedding"/> + <expand macro="layer_AlphaDropout"/> </when> </conditional> </repeat> @@ -462,13 +468,15 @@ <expand macro="inbound_nodes_index"/> </expand> </when> - <when value="RNN"> - </when> - <when value="Masking"> - </when> <when value="SimpleRNN"> + <expand macro="layer_SimpleRNN"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="GRU"> + <expand macro="layer_GRU"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="LSTM"> <expand macro="layer_LSTM"> @@ -476,18 +484,39 @@ </expand> </when> <when value="ConvLSTM2D"> + <expand macro="layer_ConvLSTM2D"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="ConvLSTM2DCell"> + <expand macro="layer_ConvLSTM2DCell"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="SimpleRNNCell"> + <expand macro="layer_SimpleRNNCell"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="GRUCell"> + <expand macro="layer_GRUCell"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="LSTMCell"> + <expand macro="layer_LSTMCell"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="CuDNNGRU"> + <expand macro="layer_CuDNNGRU"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="CuDNNLSTM"> + <expand macro="layer_CuDNNLSTM"> + <expand macro="inbound_nodes_index"/> + </expand> </when> <when value="Add"> <expand macro="layer_merge"/> @@ -549,22 +578,22 @@ </expand> </when> <when value="BatchNormalization"> - <expand macro="layer_Embedding"> + <expand macro="layer_BatchNormalization"> <expand macro="inbound_nodes_index"/> </expand> </when> <when value="GaussianNoise"> - <expand macro="layer_Embedding"> + <expand macro="layer_GaussianNoise"> <expand macro="inbound_nodes_index"/> </expand> </when> <when value="GaussianDropout"> - <expand macro="layer_Embedding"> + <expand macro="layer_GaussianDropout"> <expand macro="inbound_nodes_index"/> </expand> </when> <when value="AlphaDropout"> - <expand macro="layer_Embedding"> + <expand macro="layer_AlphaDropout"> <expand macro="inbound_nodes_index"/> </expand> </when> @@ -642,9 +671,7 @@ <param name="layer_type" value="Embedding"/> <param name="input_dim" value="10000"/> <param name="output_dim" value="512"/> - <section name="layer_options"> - <param name="input_length" value="100"/> - </section> + <param name="kwargs" value="input_length=100"/> <param name="inbound_nodes" value="1"/> </conditional> </repeat> @@ -659,9 +686,7 @@ <conditional name="layer_selection"> <param name="layer_type" value="Dense"/> <param name="units" value="1"/> - <section name="layer_options"> - <param name="activation" value="sigmoid"/> - </section> + <param name="activation" value="sigmoid"/> <param name="inbound_nodes" value="3"/> </conditional> </repeat> @@ -683,9 +708,7 @@ <conditional name="layer_selection"> <param name="layer_type" value="Dense"/> <param name="units" value="64"/> - <section name="layer_options"> - <param name="activation" value="relu"/> - </section> + <param name="activation" value="relu"/> <param name="inbound_nodes" value="6"/> </conditional> </repeat> @@ -693,9 +716,7 @@ <conditional name="layer_selection"> <param name="layer_type" value="Dense"/> <param name="units" value="64"/> - <section name="layer_options"> - <param name="activation" value="relu"/> - </section> + <param name="activation" value="relu"/> <param name="inbound_nodes" value="7"/> </conditional> </repeat> @@ -703,9 +724,7 @@ <conditional name="layer_selection"> <param name="layer_type" value="Dense"/> <param name="units" value="64"/> - <section name="layer_options"> - <param name="activation" value="relu"/> - </section> + <param name="activation" value="relu"/> <param name="inbound_nodes" value="8"/> </conditional> </repeat> @@ -713,9 +732,7 @@ <conditional name="layer_selection"> <param name="layer_type" value="Dense"/> <param name="units" value="1"/> - <section name="layer_options"> - <param name="activation" value="sigmoid"/> - </section> + <param name="activation" value="sigmoid"/> <param name="inbound_nodes" value="9"/> </conditional> </repeat>