Mercurial > repos > bgruening > locarna_pairwise
view test-data/haca.snoRNA-default.stdout @ 0:b4310d79bbfb draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 1d1d9aac8cb96d043be07f2e4059baa3b05c2afc
| author | bgruening |
|---|---|
| date | Wed, 28 Dec 2016 18:48:14 -0500 |
| parents | |
| children |
line wrap: on
line source
mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0 Copyright Sebastian Will Compute pair probs ... Compute pairwise alignments ... Perform progressive alignment ... ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGG ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGU ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGC ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCU #A1 ............................................................ #A2 ............................................................ ACA7 AGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG ACA30 GCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG ACA5 UGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG ACA59 GGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA #A1 ....AAAAAA.................................................. #A2 ....123456.................................................. ACA7 AUUGGA--AGA---CACU-CUGCG-----ACA ACA30 CAACUG--UCA---CUCA-AUGGG-----ACA ACA5 GGAUAA--AUU---UGGU-UACAG-----ACA ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA #A1 .............................BBB #A2 .............................123 alifold .((((((((........((((.(((((((......))))))).))))......))..))) ))).............((((((.....((.....((((((((((((.....))))))))) )))......)).....)).))))......... (-61.69 = -33.85 + -27.84)