view mavedb.xml @ 0:fe2937ae3ee2 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mave_tools/mavedb/ commit 13791ad3a67f107e7c5cfd925a2cbc0fb5656ab3

<?xml version="1.0"?>
<!--
    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
-->
<tool id="mavedb_importer" name="MaveDB" tool_type="data_source" version="0.9">
    <description>import MAVE data</description>
    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
    <inputs action="https://www.mavedb.org/#/" check_values="false" method="get">
                method="get">
        <display>go to MaveDB $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
        <param name="tool_id" type="hidden" value="mavedb_importer" />
        <param name="sendToGalaxy" type="hidden" value="1" />
    </inputs>
     <request_param_translation>
        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
        <request_param galaxy_name="URL" remote_name="URL" missing="" />
        <request_param galaxy_name="maveData" remote_name="maveData" missing="" />
        <request_param galaxy_name="urn" remote_name="urn" missing="" />
        <request_param galaxy_name="data_type" remote_name="outputType" missing="auto" >
            <value_translation>
                <value galaxy_value="csv" remote_value="table" />
                <value galaxy_value="json" remote_value="json" />
            </value_translation>
        </request_param>
    </request_param_translation>
    <uihints minwidth="800"/>
    <outputs>
        <data name="output" format="csv" label="${tool.name}: ${maveData} for ${urn}"/>
    </outputs>
    <options sanitize="False" refresh="True"/>
    <citations>
        <citation type="doi">10.1186/s13059-019-1845-6</citation>
    </citations>
</tool>