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+# SeqPrep Tool Documentation
+
+> [!CAUTION]
+> This is a modified version of the 1.2 release. Made for use with the MGnify pipeline.
+
+## Overview
+
+SeqPrep is a bioinformatics tool primarily used for processing paired-end Illumina reads. It excels in merging overlapping reads and trimming adapter sequences, making it a valuable asset in genomic sequence analysis. Its efficient handling of paired-end data ensures high-quality preparation for downstream analysis.
+
+## Key Features
+
+- **Read Merging**: Seamlessly merges overlapping paired-end Illumina reads into longer, single reads.
+- **Adapter Trimming**: Efficiently trims adapter sequences from read ends to improve data quality.
+- **Quality Control**: Offers options for quality score cutoff and minimum read length, enhancing the integrity of output data.
+
+## Usage
+
+For a detailed tutorial on how to use SeqPrep, please refer to the [SeqPrep Tutorial](https://github.com/jstjohn/SeqPrep/tree/master).