assembly mitogenomes from Pacbio HiFi readsmacros.xml operation_mode['command'] == 'find_reference' operation_mode['command'] == 'find_reference' operation_mode['command'] == 'mitohifi' operation_mode['command'] == 'mitohifi' operation_mode['command'] == 'mitohifi' operation_mode['command'] == 'mitohifi' operation_mode['command'] == 'mitohifi'operation_mode['command'] == 'mitohifi' and (operation_mode['advanced_options']['outputs'] and 'contigs_filtering' in operation_mode['advanced_options']['outputs'])operation_mode['command'] == 'mitohifi' and (operation_mode['advanced_options']['outputs'] and 'contigs_filtering' in operation_mode['advanced_options']['outputs'])operation_mode['command'] == 'mitohifi' and (operation_mode['advanced_options']['outputs'] and 'contigs_filtering' in operation_mode['advanced_options']['outputs'])operation_mode['command'] == 'mitohifi' and (operation_mode['advanced_options']['outputs'] and 'contigs_circularization' in operation_mode['advanced_options']['outputs'])operation_mode['command'] == 'mitohifi' and (operation_mode['advanced_options']['outputs'] and 'potential_contigs' in operation_mode['advanced_options']['outputs'])operation_mode['command'] == 'mitohifi' and (operation_mode['advanced_options']['outputs'] and 'final_mitogenome_alignment' in operation_mode['advanced_options']['outputs'])operation_mode['command'] == 'mitohifi' and operation_mode['input_option']['input'] == 'pacbio'operation_mode['command'] == 'mitohifi' and operation_mode['input_option']['input'] == 'pacbio'operation_mode['command'] == 'mitohifi' and operation_mode['input_option']['input'] == 'pacbio'operation_mode['command'] == 'mitohifi' and operation_mode['output_zip']