Mercurial > repos > bgruening > music_construct_eset

comparison construct_eset.xml @ 4:282819d09a4f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/music/ commit d007ae51743e621dc47524f681501e72ef3a2910"
author bgruening
date Mon, 02 May 2022 09:58:18 +0000
parents 7902cd31b9b5
children 48f0fb3061b1
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3:7ffaa0968da3 4:282819d09a4f
1 <tool id="music_construct_eset" name="Construct Expression Set Object" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" 1 <tool id="music_construct_eset" name="Construct Expression Set Object" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"
2 profile="20.05" license="GPL-3.0-or-later" > 2 profile="21.09" license="GPL-3.0-or-later" >
3 <description>Create an ExpressionSet object from tabular and textual data</description> 3 <description>Create an ExpressionSet object from tabular and textual data</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 cat '$conf' >> /dev/stderr &&
9 Rscript --vanilla '$conf' 10 Rscript --vanilla '$conf'
10 ]]></command> 11 ]]></command>
11 <configfiles> 12 <configfiles>
12 <configfile name="conf" > 13 <configfile name="conf" >
13 14
101 phenoData = pheno_data, 102 phenoData = pheno_data,
102 experimentData = experiment_data, 103 experimentData = experiment_data,
103 annotation = annotation) 104 annotation = annotation)
104 105
105 capture.output(print(e_set), file = '$out_txt') 106 capture.output(print(e_set), file = '$out_txt')
107 print(e_set)
106 saveRDS(e_set, file= '$out_rds') 108 saveRDS(e_set, file= '$out_rds')
107 109
108 </configfile> 110 </configfile>
109 </configfiles> 111 </configfiles>
110 <inputs> 112 <inputs>